Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00229

Experiment: PYE 4C survival rep2 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00227 and CCNA_00228 overlap by 1 nucleotidesCCNA_00228 and CCNA_00229 are separated by 119 nucleotidesCCNA_00229 and CCNA_00230 are separated by 0 nucleotides CCNA_00227: CCNA_00227 - methyltransferase, at 243,490 to 244,056 _00227 CCNA_00228: CCNA_00228 - putative membrane spanning protein, at 244,056 to 244,670 _00228 CCNA_00229: CCNA_00229 - CAAX amino terminal protease family protein, at 244,790 to 245,764 _00229 CCNA_00230: CCNA_00230 - ribosomal large subunit pseudouridine synthase B, at 245,765 to 247,003 _00230 Position (kb) 244 245 246Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 243.844 kb on + strand, within CCNA_00227at 243.848 kb on - strand, within CCNA_00227at 243.869 kb on + strand, within CCNA_00227at 243.932 kb on - strand, within CCNA_00227at 243.932 kb on - strand, within CCNA_00227at 243.939 kb on - strand, within CCNA_00227at 243.955 kb on + strand, within CCNA_00227at 243.956 kb on - strand, within CCNA_00227at 243.977 kb on - strand, within CCNA_00227at 244.016 kb on + strandat 244.016 kb on + strandat 244.022 kb on + strandat 244.062 kb on - strandat 244.063 kb on + strandat 244.063 kb on + strandat 244.063 kb on + strandat 244.063 kb on + strandat 244.063 kb on + strandat 244.063 kb on + strandat 244.063 kb on + strandat 244.063 kb on + strandat 244.063 kb on + strandat 244.068 kb on + strandat 244.068 kb on + strandat 244.071 kb on - strandat 244.071 kb on - strandat 244.071 kb on - strandat 244.071 kb on - strandat 244.071 kb on - strandat 244.076 kb on - strandat 244.076 kb on - strandat 244.076 kb on - strandat 244.112 kb on - strandat 244.112 kb on - strandat 244.135 kb on + strand, within CCNA_00228at 244.146 kb on + strand, within CCNA_00228at 244.146 kb on + strand, within CCNA_00228at 244.154 kb on - strand, within CCNA_00228at 244.155 kb on - strand, within CCNA_00228at 244.155 kb on - strand, within CCNA_00228at 244.155 kb on - strand, within CCNA_00228at 244.160 kb on + strand, within CCNA_00228at 244.161 kb on + strand, within CCNA_00228at 244.187 kb on - strand, within CCNA_00228at 244.187 kb on - strandat 244.187 kb on - strand, within CCNA_00228at 244.223 kb on + strand, within CCNA_00228at 244.245 kb on + strand, within CCNA_00228at 244.294 kb on + strand, within CCNA_00228at 244.313 kb on + strand, within CCNA_00228at 244.321 kb on - strand, within CCNA_00228at 244.323 kb on + strand, within CCNA_00228at 244.323 kb on + strand, within CCNA_00228at 244.325 kb on - strand, within CCNA_00228at 244.327 kb on + strand, within CCNA_00228at 244.327 kb on + strand, within CCNA_00228at 244.332 kb on + strand, within CCNA_00228at 244.335 kb on - strand, within CCNA_00228at 244.335 kb on - strand, within CCNA_00228at 244.351 kb on + strand, within CCNA_00228at 244.359 kb on - strand, within CCNA_00228at 244.359 kb on - strand, within CCNA_00228at 244.369 kb on - strand, within CCNA_00228at 244.369 kb on - strand, within CCNA_00228at 244.369 kb on - strand, within CCNA_00228at 244.369 kb on - strand, within CCNA_00228at 244.392 kb on + strand, within CCNA_00228at 244.392 kb on + strand, within CCNA_00228at 244.392 kb on + strand, within CCNA_00228at 244.400 kb on - strand, within CCNA_00228at 244.400 kb on - strand, within CCNA_00228at 244.400 kb on - strand, within CCNA_00228at 244.405 kb on - strand, within CCNA_00228at 244.415 kb on - strand, within CCNA_00228at 244.415 kb on - strand, within CCNA_00228at 244.546 kb on - strand, within CCNA_00228at 244.589 kb on - strand, within CCNA_00228at 244.620 kb on + strandat 244.628 kb on - strandat 244.635 kb on + strandat 244.651 kb on + strandat 244.656 kb on + strandat 244.688 kb on - strandat 244.735 kb on + strandat 244.758 kb on + strandat 244.758 kb on + strandat 244.758 kb on + strandat 244.758 kb on + strandat 244.766 kb on - strandat 244.766 kb on - strandat 244.766 kb on - strandat 244.803 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.811 kb on - strandat 244.813 kb on - strandat 244.815 kb on - strandat 244.815 kb on - strandat 244.815 kb on - strandat 244.815 kb on - strandat 244.872 kb on + strandat 244.924 kb on + strand, within CCNA_00229at 244.927 kb on - strand, within CCNA_00229at 244.943 kb on + strand, within CCNA_00229at 244.950 kb on + strand, within CCNA_00229at 244.950 kb on + strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.975 kb on + strand, within CCNA_00229at 245.002 kb on + strand, within CCNA_00229at 245.054 kb on + strand, within CCNA_00229at 245.056 kb on + strand, within CCNA_00229at 245.060 kb on + strand, within CCNA_00229at 245.060 kb on + strand, within CCNA_00229at 245.060 kb on + strand, within CCNA_00229at 245.079 kb on + strand, within CCNA_00229at 245.093 kb on - strand, within CCNA_00229at 245.096 kb on + strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.196 kb on + strand, within CCNA_00229at 245.196 kb on + strand, within CCNA_00229at 245.201 kb on + strand, within CCNA_00229at 245.204 kb on - strand, within CCNA_00229at 245.204 kb on - strand, within CCNA_00229at 245.204 kb on - strand, within CCNA_00229at 245.206 kb on + strand, within CCNA_00229at 245.209 kb on - strand, within CCNA_00229at 245.209 kb on - strand, within CCNA_00229at 245.214 kb on - strand, within CCNA_00229at 245.215 kb on + strand, within CCNA_00229at 245.257 kb on - strand, within CCNA_00229at 245.270 kb on - strand, within CCNA_00229at 245.285 kb on + strand, within CCNA_00229at 245.297 kb on - strand, within CCNA_00229at 245.297 kb on - strand, within CCNA_00229at 245.307 kb on - strand, within CCNA_00229at 245.402 kb on + strand, within CCNA_00229at 245.402 kb on + strand, within CCNA_00229at 245.424 kb on + strand, within CCNA_00229at 245.441 kb on + strand, within CCNA_00229at 245.449 kb on - strand, within CCNA_00229at 245.476 kb on - strand, within CCNA_00229at 245.486 kb on + strand, within CCNA_00229at 245.494 kb on - strand, within CCNA_00229at 245.508 kb on + strandat 245.508 kb on + strand, within CCNA_00229at 245.513 kb on + strand, within CCNA_00229at 245.518 kb on + strand, within CCNA_00229at 245.518 kb on + strand, within CCNA_00229at 245.519 kb on + strand, within CCNA_00229at 245.521 kb on - strand, within CCNA_00229at 245.526 kb on - strand, within CCNA_00229at 245.537 kb on - strand, within CCNA_00229at 245.573 kb on + strand, within CCNA_00229at 245.573 kb on + strand, within CCNA_00229at 245.573 kb on + strand, within CCNA_00229at 245.620 kb on + strand, within CCNA_00229at 245.651 kb on - strand, within CCNA_00229at 245.656 kb on - strand, within CCNA_00229at 245.666 kb on + strand, within CCNA_00229at 245.666 kb on + strand, within CCNA_00229at 245.667 kb on + strandat 245.668 kb on + strandat 245.674 kb on - strandat 245.701 kb on + strandat 245.702 kb on - strandat 245.709 kb on - strandat 245.720 kb on + strandat 245.720 kb on + strandat 245.723 kb on - strandat 245.723 kb on - strandat 245.723 kb on - strandat 245.728 kb on + strandat 245.733 kb on + strandat 245.733 kb on + strandat 245.733 kb on + strandat 245.738 kb on + strandat 245.741 kb on - strandat 245.741 kb on - strandat 245.761 kb on - strandat 245.776 kb on - strandat 245.780 kb on + strandat 245.836 kb on - strandat 245.926 kb on - strand, within CCNA_00230at 245.948 kb on - strand, within CCNA_00230at 245.948 kb on - strand, within CCNA_00230at 245.977 kb on - strand, within CCNA_00230at 245.982 kb on + strand, within CCNA_00230at 245.990 kb on - strand, within CCNA_00230at 245.990 kb on - strand, within CCNA_00230at 246.001 kb on - strandat 246.013 kb on + strand, within CCNA_00230at 246.032 kb on - strand, within CCNA_00230at 246.043 kb on - strand, within CCNA_00230at 246.043 kb on - strand, within CCNA_00230at 246.058 kb on + strand, within CCNA_00230at 246.066 kb on - strand, within CCNA_00230at 246.066 kb on - strand, within CCNA_00230at 246.074 kb on - strand, within CCNA_00230at 246.168 kb on + strand, within CCNA_00230at 246.176 kb on - strandat 246.176 kb on - strand, within CCNA_00230at 246.202 kb on - strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on - strand, within CCNA_00230at 246.257 kb on - strand, within CCNA_00230at 246.280 kb on + strand, within CCNA_00230at 246.309 kb on + strand, within CCNA_00230at 246.319 kb on + strand, within CCNA_00230at 246.327 kb on - strand, within CCNA_00230at 246.343 kb on - strand, within CCNA_00230at 246.359 kb on + strand, within CCNA_00230at 246.374 kb on - strand, within CCNA_00230at 246.376 kb on + strand, within CCNA_00230at 246.384 kb on - strand, within CCNA_00230at 246.427 kb on + strand, within CCNA_00230at 246.448 kb on + strand, within CCNA_00230at 246.448 kb on + strand, within CCNA_00230at 246.495 kb on + strand, within CCNA_00230at 246.495 kb on + strand, within CCNA_00230at 246.500 kb on + strand, within CCNA_00230at 246.503 kb on - strand, within CCNA_00230at 246.503 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.551 kb on - strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.601 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.617 kb on + strand, within CCNA_00230at 246.625 kb on - strand, within CCNA_00230at 246.657 kb on + strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.727 kb on + strand, within CCNA_00230at 246.735 kb on - strand, within CCNA_00230

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep2 58 days
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243,844 + CCNA_00227 0.62 -3.1
243,848 - CCNA_00227 0.63 -2.9
243,869 + CCNA_00227 0.67 +0.7
243,932 - CCNA_00227 0.78 -1.2
243,932 - CCNA_00227 0.78 +2.0
243,939 - CCNA_00227 0.79 -0.5
243,955 + CCNA_00227 0.82 -0.6
243,956 - CCNA_00227 0.82 -0.8
243,977 - CCNA_00227 0.86 +0.5
244,016 + -1.3
244,016 + -1.2
244,022 + -1.2
244,062 - +1.6
244,063 + -2.2
244,063 + -1.3
244,063 + -1.3
244,063 + -2.0
244,063 + -1.3
244,063 + +0.4
244,063 + -1.5
244,063 + +2.0
244,063 + -2.5
244,068 + +2.0
244,068 + -0.3
244,071 - -0.3
244,071 - -0.4
244,071 - +0.6
244,071 - -1.1
244,071 - +0.2
244,076 - +0.0
244,076 - -2.0
244,076 - -1.2
244,112 - +0.4
244,112 - -1.7
244,135 + CCNA_00228 0.13 -0.3
244,146 + CCNA_00228 0.15 +2.0
244,146 + CCNA_00228 0.15 +1.0
244,154 - CCNA_00228 0.16 +0.6
244,155 - CCNA_00228 0.16 +0.4
244,155 - CCNA_00228 0.16 -0.2
244,155 - CCNA_00228 0.16 +0.0
244,160 + CCNA_00228 0.17 -1.1
244,161 + CCNA_00228 0.17 +3.0
244,187 - CCNA_00228 0.21 -0.4
244,187 - +2.0
244,187 - CCNA_00228 0.21 -1.2
244,223 + CCNA_00228 0.27 +0.0
244,245 + CCNA_00228 0.31 -0.3
244,294 + CCNA_00228 0.39 -1.9
244,313 + CCNA_00228 0.42 -1.6
244,321 - CCNA_00228 0.43 +0.6
244,323 + CCNA_00228 0.43 +0.4
244,323 + CCNA_00228 0.43 -2.6
244,325 - CCNA_00228 0.44 +0.2
244,327 + CCNA_00228 0.44 -1.8
244,327 + CCNA_00228 0.44 +0.7
244,332 + CCNA_00228 0.45 +2.0
244,335 - CCNA_00228 0.45 -2.9
244,335 - CCNA_00228 0.45 -0.6
244,351 + CCNA_00228 0.48 +2.0
244,359 - CCNA_00228 0.49 -0.3
244,359 - CCNA_00228 0.49 +1.4
244,369 - CCNA_00228 0.51 -0.6
244,369 - CCNA_00228 0.51 +0.5
244,369 - CCNA_00228 0.51 +0.3
244,369 - CCNA_00228 0.51 -2.2
244,392 + CCNA_00228 0.55 +0.0
244,392 + CCNA_00228 0.55 +4.6
244,392 + CCNA_00228 0.55 -2.9
244,400 - CCNA_00228 0.56 +0.4
244,400 - CCNA_00228 0.56 -1.5
244,400 - CCNA_00228 0.56 -2.8
244,405 - CCNA_00228 0.57 -2.2
244,415 - CCNA_00228 0.58 -0.3
244,415 - CCNA_00228 0.58 +0.5
244,546 - CCNA_00228 0.80 -0.3
244,589 - CCNA_00228 0.87 -0.6
244,620 + -1.1
244,628 - +0.4
244,635 + -2.2
244,651 + +0.0
244,656 + -2.7
244,688 - -1.2
244,735 + -1.4
244,758 + -2.2
244,758 + -0.9
244,758 + +1.3
244,758 + -0.9
244,766 - -0.1
244,766 - -1.8
244,766 - -1.8
244,803 + -0.5
244,807 + -0.8
244,807 + +0.3
244,807 + -2.2
244,807 + +1.3
244,807 + +1.0
244,807 + -1.0
244,811 - -1.8
244,813 - -1.8
244,815 - -0.2
244,815 - -1.0
244,815 - +0.3
244,815 - +0.4
244,872 + +1.0
244,924 + CCNA_00229 0.14 -3.1
244,927 - CCNA_00229 0.14 -2.7
244,943 + CCNA_00229 0.16 -2.3
244,950 + CCNA_00229 0.16 -2.6
244,950 + CCNA_00229 0.16 -0.4
244,951 - CCNA_00229 0.17 -4.2
244,951 - CCNA_00229 0.17 -0.5
244,951 - CCNA_00229 0.17 -2.3
244,951 - CCNA_00229 0.17 -2.6
244,951 - CCNA_00229 0.17 -1.9
244,951 - CCNA_00229 0.17 -3.1
244,975 + CCNA_00229 0.19 -2.2
245,002 + CCNA_00229 0.22 -1.5
245,054 + CCNA_00229 0.27 -2.0
245,056 + CCNA_00229 0.27 -1.3
245,060 + CCNA_00229 0.28 -2.0
245,060 + CCNA_00229 0.28 -4.3
245,060 + CCNA_00229 0.28 -2.3
245,079 + CCNA_00229 0.30 -1.8
245,093 - CCNA_00229 0.31 -2.8
245,096 + CCNA_00229 0.31 -1.0
245,194 - CCNA_00229 0.41 -2.6
245,194 - CCNA_00229 0.41 -0.6
245,194 - CCNA_00229 0.41 +1.0
245,194 - CCNA_00229 0.41 -1.2
245,196 + CCNA_00229 0.42 -1.3
245,196 + CCNA_00229 0.42 -0.9
245,201 + CCNA_00229 0.42 -2.0
245,204 - CCNA_00229 0.42 -0.8
245,204 - CCNA_00229 0.42 -0.5
245,204 - CCNA_00229 0.42 -1.8
245,206 + CCNA_00229 0.43 -1.6
245,209 - CCNA_00229 0.43 +0.4
245,209 - CCNA_00229 0.43 -0.3
245,214 - CCNA_00229 0.43 -2.7
245,215 + CCNA_00229 0.44 -2.5
245,257 - CCNA_00229 0.48 -1.3
245,270 - CCNA_00229 0.49 +0.4
245,285 + CCNA_00229 0.51 -2.3
245,297 - CCNA_00229 0.52 -0.6
245,297 - CCNA_00229 0.52 -2.2
245,307 - CCNA_00229 0.53 -2.1
245,402 + CCNA_00229 0.63 -1.8
245,402 + CCNA_00229 0.63 +0.7
245,424 + CCNA_00229 0.65 -1.2
245,441 + CCNA_00229 0.67 +2.0
245,449 - CCNA_00229 0.68 -2.3
245,476 - CCNA_00229 0.70 -1.6
245,486 + CCNA_00229 0.71 -0.0
245,494 - CCNA_00229 0.72 -1.8
245,508 + -1.0
245,508 + CCNA_00229 0.74 -1.7
245,513 + CCNA_00229 0.74 -1.0
245,518 + CCNA_00229 0.75 -1.2
245,518 + CCNA_00229 0.75 -2.3
245,519 + CCNA_00229 0.75 +0.6
245,521 - CCNA_00229 0.75 -1.5
245,526 - CCNA_00229 0.75 -1.3
245,537 - CCNA_00229 0.77 -1.3
245,573 + CCNA_00229 0.80 +0.3
245,573 + CCNA_00229 0.80 -3.5
245,573 + CCNA_00229 0.80 -2.9
245,620 + CCNA_00229 0.85 -1.6
245,651 - CCNA_00229 0.88 -2.5
245,656 - CCNA_00229 0.89 -1.5
245,666 + CCNA_00229 0.90 -2.5
245,666 + CCNA_00229 0.90 -1.6
245,667 + -0.5
245,668 + -2.6
245,674 - -1.3
245,701 + -1.3
245,702 - -0.8
245,709 - -0.5
245,720 + -2.0
245,720 + -2.0
245,723 - +0.4
245,723 - -1.6
245,723 - -3.0
245,728 + -0.7
245,733 + +0.7
245,733 + +0.7
245,733 + +0.9
245,738 + -0.6
245,741 - +0.2
245,741 - -1.7
245,761 - -0.7
245,776 - -1.1
245,780 + -1.1
245,836 - -0.1
245,926 - CCNA_00230 0.13 +2.7
245,948 - CCNA_00230 0.15 -0.5
245,948 - CCNA_00230 0.15 -0.2
245,977 - CCNA_00230 0.17 -0.0
245,982 + CCNA_00230 0.18 -0.1
245,990 - CCNA_00230 0.18 +1.0
245,990 - CCNA_00230 0.18 +0.4
246,001 - -0.7
246,013 + CCNA_00230 0.20 -2.0
246,032 - CCNA_00230 0.22 -0.2
246,043 - CCNA_00230 0.22 -0.9
246,043 - CCNA_00230 0.22 -0.6
246,058 + CCNA_00230 0.24 -0.3
246,066 - CCNA_00230 0.24 +0.1
246,066 - CCNA_00230 0.24 +0.1
246,074 - CCNA_00230 0.25 -0.4
246,168 + CCNA_00230 0.33 -1.2
246,176 - -2.1
246,176 - CCNA_00230 0.33 +0.0
246,202 - CCNA_00230 0.35 +0.4
246,213 + CCNA_00230 0.36 -0.6
246,213 + CCNA_00230 0.36 -0.3
246,213 + CCNA_00230 0.36 +0.7
246,213 - CCNA_00230 0.36 -0.7
246,257 - CCNA_00230 0.40 -1.9
246,280 + CCNA_00230 0.42 -2.2
246,309 + CCNA_00230 0.44 -2.1
246,319 + CCNA_00230 0.45 -0.1
246,327 - CCNA_00230 0.45 -0.3
246,343 - CCNA_00230 0.47 +0.4
246,359 + CCNA_00230 0.48 -0.8
246,374 - CCNA_00230 0.49 -1.6
246,376 + CCNA_00230 0.49 +1.0
246,384 - CCNA_00230 0.50 -0.0
246,427 + CCNA_00230 0.53 +0.4
246,448 + CCNA_00230 0.55 -1.2
246,448 + CCNA_00230 0.55 -1.0
246,495 + CCNA_00230 0.59 -1.7
246,495 + CCNA_00230 0.59 -0.8
246,500 + CCNA_00230 0.59 -0.3
246,503 - CCNA_00230 0.60 +0.3
246,503 - CCNA_00230 0.60 -1.9
246,508 - CCNA_00230 0.60 +0.6
246,508 - CCNA_00230 0.60 -1.8
246,508 - CCNA_00230 0.60 -1.6
246,551 - CCNA_00230 0.63 -0.3
246,562 + CCNA_00230 0.64 -0.6
246,562 + CCNA_00230 0.64 +2.0
246,570 - CCNA_00230 0.65 -2.0
246,570 - CCNA_00230 0.65 +0.2
246,601 + CCNA_00230 0.67 -0.0
246,609 + CCNA_00230 0.68 -2.4
246,609 + CCNA_00230 0.68 +0.4
246,617 + CCNA_00230 0.69 -0.6
246,625 - CCNA_00230 0.69 -0.4
246,657 + CCNA_00230 0.72 +1.0
246,665 - CCNA_00230 0.73 +0.3
246,665 - CCNA_00230 0.73 -0.3
246,665 - CCNA_00230 0.73 -1.0
246,665 - CCNA_00230 0.73 -0.9
246,665 - CCNA_00230 0.73 +0.2
246,665 - CCNA_00230 0.73 -1.4
246,727 + CCNA_00230 0.78 -0.7
246,735 - CCNA_00230 0.78 +1.0

Or see this region's nucleotide sequence