Experiment: PYE 4C survival rep2 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00144 and CCNA_00145 overlap by 8 nucleotides CCNA_00145 and CCNA_00146 are separated by 24 nucleotides CCNA_00146 and CCNA_00147 are separated by 167 nucleotides CCNA_00147 and CCNA_00148 are separated by 75 nucleotides
CCNA_00144: CCNA_00144 - oxygen-independent coproporphyrinogen-III oxidase, at 155,819 to 156,973
_00144
CCNA_00145: CCNA_00145 - xanthosine triphosphate pyrophosphatase, at 156,966 to 157,568
_00145
CCNA_00146: CCNA_00146 - glutathione S-transferase, at 157,593 to 158,186
_00146
CCNA_00147: CCNA_00147 - hypothetical protein, at 158,354 to 158,470
_00147
CCNA_00148: CCNA_00148 - hypothetical protein, at 158,546 to 159,079
_00148
Position (kb) 156
157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 155.968 kb on + strand, within CCNA_00144 at 155.968 kb on + strand, within CCNA_00144 at 155.968 kb on + strand, within CCNA_00144 at 155.976 kb on - strand, within CCNA_00144 at 155.976 kb on - strand, within CCNA_00144 at 155.976 kb on - strand, within CCNA_00144 at 155.976 kb on - strand, within CCNA_00144 at 155.976 kb on - strand, within CCNA_00144 at 155.976 kb on - strand, within CCNA_00144 at 155.999 kb on + strand, within CCNA_00144 at 156.000 kb on + strand, within CCNA_00144 at 156.008 kb on - strand, within CCNA_00144 at 156.008 kb on - strand, within CCNA_00144 at 156.014 kb on + strand, within CCNA_00144 at 156.014 kb on + strand, within CCNA_00144 at 156.014 kb on + strand, within CCNA_00144 at 156.014 kb on + strand, within CCNA_00144 at 156.014 kb on + strand, within CCNA_00144 at 156.022 kb on - strand, within CCNA_00144 at 156.022 kb on - strand, within CCNA_00144 at 156.022 kb on - strand, within CCNA_00144 at 156.022 kb on - strand, within CCNA_00144 at 156.022 kb on - strand, within CCNA_00144 at 156.022 kb on - strand, within CCNA_00144 at 156.089 kb on - strand, within CCNA_00144 at 156.092 kb on - strand, within CCNA_00144 at 156.097 kb on - strand, within CCNA_00144 at 156.154 kb on - strand, within CCNA_00144 at 156.206 kb on - strand, within CCNA_00144 at 156.211 kb on - strand, within CCNA_00144 at 156.227 kb on - strand, within CCNA_00144 at 156.227 kb on - strand, within CCNA_00144 at 156.244 kb on + strand, within CCNA_00144 at 156.244 kb on - strand, within CCNA_00144 at 156.252 kb on - strand, within CCNA_00144 at 156.288 kb on + strand, within CCNA_00144 at 156.288 kb on + strand, within CCNA_00144 at 156.296 kb on - strand, within CCNA_00144 at 156.324 kb on - strand, within CCNA_00144 at 156.326 kb on + strand, within CCNA_00144 at 156.334 kb on - strand, within CCNA_00144 at 156.360 kb on - strand, within CCNA_00144 at 156.361 kb on - strand, within CCNA_00144 at 156.361 kb on - strand, within CCNA_00144 at 156.385 kb on - strand, within CCNA_00144 at 156.390 kb on + strand, within CCNA_00144 at 156.390 kb on + strand, within CCNA_00144 at 156.398 kb on - strand, within CCNA_00144 at 156.408 kb on - strand, within CCNA_00144 at 156.415 kb on - strand, within CCNA_00144 at 156.433 kb on - strand, within CCNA_00144 at 156.452 kb on + strand, within CCNA_00144 at 156.452 kb on + strand, within CCNA_00144 at 156.460 kb on - strand, within CCNA_00144 at 156.460 kb on - strand, within CCNA_00144 at 156.468 kb on + strand, within CCNA_00144 at 156.468 kb on + strand, within CCNA_00144 at 156.468 kb on + strand, within CCNA_00144 at 156.476 kb on - strand, within CCNA_00144 at 156.481 kb on - strand, within CCNA_00144 at 156.540 kb on + strand, within CCNA_00144 at 156.554 kb on + strand, within CCNA_00144 at 156.556 kb on - strand, within CCNA_00144 at 156.602 kb on - strand, within CCNA_00144 at 156.605 kb on + strand, within CCNA_00144 at 156.605 kb on + strand, within CCNA_00144 at 156.623 kb on + strand, within CCNA_00144 at 156.645 kb on + strand, within CCNA_00144 at 156.645 kb on + strand, within CCNA_00144 at 156.677 kb on + strand, within CCNA_00144 at 156.688 kb on - strand, within CCNA_00144 at 156.699 kb on + strand, within CCNA_00144 at 156.802 kb on - strand, within CCNA_00144 at 156.816 kb on - strand, within CCNA_00144 at 156.819 kb on + strand, within CCNA_00144 at 156.819 kb on + strand, within CCNA_00144 at 156.819 kb on + strand, within CCNA_00144 at 156.820 kb on - strand, within CCNA_00144 at 156.827 kb on - strand, within CCNA_00144 at 156.827 kb on - strand, within CCNA_00144 at 156.845 kb on + strand, within CCNA_00144 at 156.888 kb on + strand at 156.888 kb on + strand at 156.888 kb on + strand at 156.896 kb on - strand at 156.896 kb on - strand at 156.921 kb on + strand at 156.921 kb on + strand at 156.921 kb on + strand at 156.921 kb on + strand at 156.921 kb on + strand at 156.929 kb on - strand at 156.929 kb on - strand at 156.929 kb on - strand at 156.965 kb on - strand at 156.982 kb on + strand at 157.053 kb on + strand, within CCNA_00145 at 157.053 kb on + strand, within CCNA_00145 at 157.060 kb on + strand, within CCNA_00145 at 157.061 kb on - strand, within CCNA_00145 at 157.061 kb on - strand, within CCNA_00145 at 157.061 kb on - strand, within CCNA_00145 at 157.061 kb on - strand, within CCNA_00145 at 157.061 kb on - strand, within CCNA_00145 at 157.061 kb on - strand, within CCNA_00145 at 157.062 kb on - strand, within CCNA_00145 at 157.062 kb on - strand, within CCNA_00145 at 157.080 kb on + strand, within CCNA_00145 at 157.080 kb on + strand, within CCNA_00145 at 157.093 kb on - strand, within CCNA_00145 at 157.122 kb on + strand, within CCNA_00145 at 157.130 kb on - strand, within CCNA_00145 at 157.151 kb on - strand, within CCNA_00145 at 157.151 kb on - strand, within CCNA_00145 at 157.152 kb on - strand, within CCNA_00145 at 157.157 kb on - strand, within CCNA_00145 at 157.176 kb on + strand, within CCNA_00145 at 157.176 kb on + strand, within CCNA_00145 at 157.176 kb on + strand, within CCNA_00145 at 157.184 kb on - strand, within CCNA_00145 at 157.184 kb on - strand, within CCNA_00145 at 157.187 kb on + strand, within CCNA_00145 at 157.187 kb on + strand, within CCNA_00145 at 157.197 kb on + strand, within CCNA_00145 at 157.197 kb on + strand, within CCNA_00145 at 157.233 kb on - strand, within CCNA_00145 at 157.237 kb on - strand, within CCNA_00145 at 157.237 kb on - strand, within CCNA_00145 at 157.239 kb on + strand, within CCNA_00145 at 157.239 kb on + strand, within CCNA_00145 at 157.248 kb on - strand, within CCNA_00145 at 157.269 kb on + strand, within CCNA_00145 at 157.277 kb on - strand, within CCNA_00145 at 157.277 kb on - strand, within CCNA_00145 at 157.284 kb on + strand, within CCNA_00145 at 157.288 kb on - strand, within CCNA_00145 at 157.325 kb on - strand, within CCNA_00145 at 157.325 kb on - strand, within CCNA_00145 at 157.345 kb on - strand, within CCNA_00145 at 157.345 kb on - strand, within CCNA_00145 at 157.364 kb on + strand, within CCNA_00145 at 157.364 kb on + strand, within CCNA_00145 at 157.373 kb on + strand, within CCNA_00145 at 157.374 kb on - strand, within CCNA_00145 at 157.381 kb on - strand, within CCNA_00145 at 157.381 kb on - strand, within CCNA_00145 at 157.381 kb on - strand, within CCNA_00145 at 157.390 kb on + strand, within CCNA_00145 at 157.390 kb on + strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.434 kb on - strand, within CCNA_00145 at 157.445 kb on + strand, within CCNA_00145 at 157.500 kb on + strand, within CCNA_00145 at 157.516 kb on + strand at 157.517 kb on + strand at 157.538 kb on + strand at 157.550 kb on + strand at 157.550 kb on + strand at 157.681 kb on - strand, within CCNA_00146 at 157.695 kb on - strand, within CCNA_00146 at 157.705 kb on - strand, within CCNA_00146 at 157.741 kb on - strand, within CCNA_00146 at 157.748 kb on - strand, within CCNA_00146 at 157.773 kb on + strand, within CCNA_00146 at 157.773 kb on + strand, within CCNA_00146 at 157.773 kb on + strand, within CCNA_00146 at 157.775 kb on + strand, within CCNA_00146 at 157.781 kb on - strand, within CCNA_00146 at 157.814 kb on + strand, within CCNA_00146 at 157.814 kb on + strand, within CCNA_00146 at 157.860 kb on + strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.887 kb on + strand, within CCNA_00146 at 157.902 kb on + strand, within CCNA_00146 at 157.948 kb on + strand, within CCNA_00146 at 157.948 kb on + strand, within CCNA_00146 at 157.948 kb on + strand, within CCNA_00146 at 157.956 kb on - strand, within CCNA_00146 at 157.956 kb on - strand, within CCNA_00146 at 157.965 kb on + strand, within CCNA_00146 at 157.978 kb on - strand, within CCNA_00146 at 158.016 kb on - strand, within CCNA_00146 at 158.071 kb on + strand, within CCNA_00146 at 158.079 kb on - strand, within CCNA_00146 at 158.124 kb on + strand, within CCNA_00146 at 158.128 kb on + strand at 158.139 kb on + strand at 158.147 kb on - strand at 158.149 kb on - strand at 158.172 kb on - strand at 158.174 kb on + strand at 158.181 kb on + strand at 158.181 kb on + strand at 158.189 kb on - strand at 158.194 kb on - strand at 158.291 kb on + strand at 158.294 kb on - strand at 158.299 kb on - strand at 158.299 kb on - strand at 158.309 kb on - strand at 158.334 kb on + strand at 158.366 kb on + strand, within CCNA_00147 at 158.434 kb on + strand, within CCNA_00147 at 158.463 kb on + strand at 158.463 kb on + strand at 158.464 kb on - strand at 158.465 kb on + strand at 158.465 kb on + strand at 158.465 kb on + strand at 158.465 kb on + strand at 158.471 kb on - strand at 158.471 kb on - strand at 158.492 kb on - strand at 158.492 kb on - strand at 158.517 kb on + strand at 158.532 kb on + strand at 158.553 kb on + strand at 158.553 kb on + strand at 158.553 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep2 58 days remove 155,968 + CCNA_00144 0.13 +0.1 155,968 + CCNA_00144 0.13 +2.8 155,968 + CCNA_00144 0.13 +1.1 155,976 - CCNA_00144 0.14 -0.4 155,976 - CCNA_00144 0.14 +0.3 155,976 - CCNA_00144 0.14 -0.5 155,976 - CCNA_00144 0.14 -0.9 155,976 - CCNA_00144 0.14 -0.3 155,976 - CCNA_00144 0.14 +1.6 155,999 + CCNA_00144 0.16 -2.6 156,000 + CCNA_00144 0.16 +0.3 156,008 - CCNA_00144 0.16 -1.6 156,008 - CCNA_00144 0.16 +0.1 156,014 + CCNA_00144 0.17 -2.3 156,014 + CCNA_00144 0.17 -1.1 156,014 + CCNA_00144 0.17 -1.8 156,014 + CCNA_00144 0.17 -0.8 156,014 + CCNA_00144 0.17 -0.9 156,022 - CCNA_00144 0.18 +1.6 156,022 - CCNA_00144 0.18 +3.9 156,022 - CCNA_00144 0.18 +0.1 156,022 - CCNA_00144 0.18 -1.3 156,022 - CCNA_00144 0.18 +0.4 156,022 - CCNA_00144 0.18 +0.5 156,089 - CCNA_00144 0.23 -0.3 156,092 - CCNA_00144 0.24 -1.7 156,097 - CCNA_00144 0.24 +0.8 156,154 - CCNA_00144 0.29 +0.7 156,206 - CCNA_00144 0.34 -1.8 156,211 - CCNA_00144 0.34 -1.7 156,227 - CCNA_00144 0.35 -0.0 156,227 - CCNA_00144 0.35 -0.0 156,244 + CCNA_00144 0.37 -2.9 156,244 - CCNA_00144 0.37 +0.8 156,252 - CCNA_00144 0.37 +0.2 156,288 + CCNA_00144 0.41 -1.4 156,288 + CCNA_00144 0.41 -0.4 156,296 - CCNA_00144 0.41 +0.6 156,324 - CCNA_00144 0.44 -2.6 156,326 + CCNA_00144 0.44 -0.4 156,334 - CCNA_00144 0.45 -0.8 156,360 - CCNA_00144 0.47 -0.7 156,361 - CCNA_00144 0.47 +0.8 156,361 - CCNA_00144 0.47 +0.2 156,385 - CCNA_00144 0.49 +0.1 156,390 + CCNA_00144 0.49 +0.1 156,390 + CCNA_00144 0.49 -1.5 156,398 - CCNA_00144 0.50 +0.1 156,408 - CCNA_00144 0.51 +2.6 156,415 - CCNA_00144 0.52 -1.3 156,433 - CCNA_00144 0.53 +0.0 156,452 + CCNA_00144 0.55 +0.6 156,452 + CCNA_00144 0.55 -4.5 156,460 - CCNA_00144 0.55 +0.0 156,460 - CCNA_00144 0.55 -0.5 156,468 + CCNA_00144 0.56 -0.9 156,468 + CCNA_00144 0.56 +0.4 156,468 + CCNA_00144 0.56 +1.3 156,476 - CCNA_00144 0.57 +0.6 156,481 - CCNA_00144 0.57 +0.1 156,540 + CCNA_00144 0.62 +1.3 156,554 + CCNA_00144 0.64 -0.2 156,556 - CCNA_00144 0.64 +0.5 156,602 - CCNA_00144 0.68 +1.8 156,605 + CCNA_00144 0.68 +1.3 156,605 + CCNA_00144 0.68 -0.3 156,623 + CCNA_00144 0.70 +0.6 156,645 + CCNA_00144 0.72 -0.3 156,645 + CCNA_00144 0.72 -0.3 156,677 + CCNA_00144 0.74 +0.2 156,688 - CCNA_00144 0.75 -2.0 156,699 + CCNA_00144 0.76 -1.0 156,802 - CCNA_00144 0.85 -0.5 156,816 - CCNA_00144 0.86 -0.4 156,819 + CCNA_00144 0.87 -1.4 156,819 + CCNA_00144 0.87 -1.8 156,819 + CCNA_00144 0.87 -2.0 156,820 - CCNA_00144 0.87 -0.5 156,827 - CCNA_00144 0.87 -0.0 156,827 - CCNA_00144 0.87 +1.0 156,845 + CCNA_00144 0.89 -1.3 156,888 + -1.4 156,888 + -2.7 156,888 + -0.5 156,896 - +0.9 156,896 - +0.9 156,921 + -1.3 156,921 + +0.5 156,921 + +0.5 156,921 + -2.3 156,921 + -0.1 156,929 - -0.2 156,929 - -0.6 156,929 - +0.3 156,965 - +0.9 156,982 + +0.3 157,053 + CCNA_00145 0.14 +0.5 157,053 + CCNA_00145 0.14 -0.3 157,060 + CCNA_00145 0.16 -2.9 157,061 - CCNA_00145 0.16 +1.9 157,061 - CCNA_00145 0.16 -0.3 157,061 - CCNA_00145 0.16 +1.3 157,061 - CCNA_00145 0.16 -2.4 157,061 - CCNA_00145 0.16 -1.8 157,061 - CCNA_00145 0.16 -0.4 157,062 - CCNA_00145 0.16 -1.2 157,062 - CCNA_00145 0.16 -1.5 157,080 + CCNA_00145 0.19 -4.2 157,080 + CCNA_00145 0.19 -0.7 157,093 - CCNA_00145 0.21 -0.7 157,122 + CCNA_00145 0.26 +0.5 157,130 - CCNA_00145 0.27 -2.0 157,151 - CCNA_00145 0.31 -1.7 157,151 - CCNA_00145 0.31 -1.8 157,152 - CCNA_00145 0.31 -4.0 157,157 - CCNA_00145 0.32 -0.5 157,176 + CCNA_00145 0.35 -0.9 157,176 + CCNA_00145 0.35 -0.2 157,176 + CCNA_00145 0.35 -0.7 157,184 - CCNA_00145 0.36 -3.0 157,184 - CCNA_00145 0.36 -0.7 157,187 + CCNA_00145 0.37 -3.7 157,187 + CCNA_00145 0.37 -1.3 157,197 + CCNA_00145 0.38 +0.2 157,197 + CCNA_00145 0.38 +2.1 157,233 - CCNA_00145 0.44 -2.5 157,237 - CCNA_00145 0.45 -2.3 157,237 - CCNA_00145 0.45 -0.3 157,239 + CCNA_00145 0.45 -0.4 157,239 + CCNA_00145 0.45 -0.7 157,248 - CCNA_00145 0.47 -1.4 157,269 + CCNA_00145 0.50 -1.5 157,277 - CCNA_00145 0.52 -1.5 157,277 - CCNA_00145 0.52 -2.5 157,284 + CCNA_00145 0.53 -1.4 157,288 - CCNA_00145 0.53 -3.4 157,325 - CCNA_00145 0.60 -2.8 157,325 - CCNA_00145 0.60 -2.3 157,345 - CCNA_00145 0.63 -2.2 157,345 - CCNA_00145 0.63 -1.7 157,364 + CCNA_00145 0.66 -0.7 157,364 + CCNA_00145 0.66 -2.9 157,373 + CCNA_00145 0.67 -3.5 157,374 - CCNA_00145 0.68 -0.4 157,381 - CCNA_00145 0.69 -3.0 157,381 - CCNA_00145 0.69 -0.3 157,381 - CCNA_00145 0.69 -2.8 157,390 + CCNA_00145 0.70 -1.6 157,390 + CCNA_00145 0.70 -0.7 157,398 - CCNA_00145 0.72 -0.5 157,398 - CCNA_00145 0.72 -2.6 157,398 - CCNA_00145 0.72 -1.8 157,398 - CCNA_00145 0.72 -1.4 157,398 - CCNA_00145 0.72 -1.7 157,398 - CCNA_00145 0.72 -1.1 157,434 - CCNA_00145 0.78 -2.4 157,445 + CCNA_00145 0.79 -1.8 157,500 + CCNA_00145 0.89 -1.3 157,516 + -1.5 157,517 + -1.7 157,538 + -0.9 157,550 + -0.3 157,550 + -1.4 157,681 - CCNA_00146 0.15 +0.3 157,695 - CCNA_00146 0.17 -3.8 157,705 - CCNA_00146 0.19 -0.5 157,741 - CCNA_00146 0.25 +1.2 157,748 - CCNA_00146 0.26 -0.3 157,773 + CCNA_00146 0.30 -1.6 157,773 + CCNA_00146 0.30 -0.4 157,773 + CCNA_00146 0.30 -0.7 157,775 + CCNA_00146 0.31 -2.4 157,781 - CCNA_00146 0.32 -1.9 157,814 + CCNA_00146 0.37 +0.5 157,814 + CCNA_00146 0.37 -0.7 157,860 + CCNA_00146 0.45 -0.6 157,868 - CCNA_00146 0.46 -1.0 157,868 - CCNA_00146 0.46 -1.8 157,868 - CCNA_00146 0.46 -0.3 157,868 - CCNA_00146 0.46 -0.5 157,868 - CCNA_00146 0.46 -0.0 157,887 + CCNA_00146 0.49 +0.2 157,902 + CCNA_00146 0.52 -1.9 157,948 + CCNA_00146 0.60 +0.6 157,948 + CCNA_00146 0.60 +0.0 157,948 + CCNA_00146 0.60 -0.5 157,956 - CCNA_00146 0.61 -0.9 157,956 - CCNA_00146 0.61 -4.0 157,965 + CCNA_00146 0.63 +0.1 157,978 - CCNA_00146 0.65 +0.1 158,016 - CCNA_00146 0.71 +0.3 158,071 + CCNA_00146 0.80 +1.3 158,079 - CCNA_00146 0.82 +1.2 158,124 + CCNA_00146 0.89 +1.7 158,128 + -1.1 158,139 + -0.9 158,147 - -1.2 158,149 - -0.4 158,172 - -2.1 158,174 + -0.2 158,181 + -0.5 158,181 + -0.6 158,189 - +0.3 158,194 - -0.9 158,291 + -0.5 158,294 - -1.1 158,299 - -1.1 158,299 - -1.3 158,309 - -1.3 158,334 + -2.5 158,366 + CCNA_00147 0.10 -1.1 158,434 + CCNA_00147 0.68 -1.4 158,463 + +0.4 158,463 + +0.3 158,464 - -2.9 158,465 + -0.6 158,465 + -0.7 158,465 + +0.1 158,465 + +0.3 158,471 - -3.6 158,471 - -3.3 158,492 - -3.1 158,492 - -0.5 158,517 + -0.8 158,532 + +0.6 158,553 + +2.5 158,553 + +2.3 158,553 + +2.5
Or see this region's nucleotide sequence