Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00131

Experiment: PYE 4C survival rep2 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00130 and CCNA_00131 are separated by 200 nucleotidesCCNA_00131 and CCNA_00132 are separated by 91 nucleotides CCNA_00130: CCNA_00130 - Kup system potassium uptake protein, at 138,921 to 140,918 _00130 CCNA_00131: CCNA_00131 - Rrf2 family protein, at 141,119 to 141,541 _00131 CCNA_00132: CCNA_00132 - ketoacyl reductase hetN, at 141,633 to 142,433 _00132 Position (kb) 141 142Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 141.004 kb on + strandat 141.048 kb on + strandat 141.157 kb on - strandat 141.192 kb on - strand, within CCNA_00131at 141.210 kb on + strand, within CCNA_00131at 141.210 kb on + strand, within CCNA_00131at 141.259 kb on + strand, within CCNA_00131at 141.259 kb on + strand, within CCNA_00131at 141.264 kb on + strand, within CCNA_00131at 141.264 kb on + strand, within CCNA_00131at 141.264 kb on + strand, within CCNA_00131at 141.267 kb on - strand, within CCNA_00131at 141.272 kb on - strand, within CCNA_00131at 141.274 kb on + strand, within CCNA_00131at 141.274 kb on + strand, within CCNA_00131at 141.279 kb on + strand, within CCNA_00131at 141.292 kb on - strand, within CCNA_00131at 141.292 kb on - strand, within CCNA_00131at 141.318 kb on + strand, within CCNA_00131at 141.328 kb on + strand, within CCNA_00131at 141.328 kb on + strand, within CCNA_00131at 141.328 kb on + strand, within CCNA_00131at 141.345 kb on + strand, within CCNA_00131at 141.370 kb on - strand, within CCNA_00131at 141.370 kb on - strand, within CCNA_00131at 141.372 kb on - strand, within CCNA_00131at 141.381 kb on + strand, within CCNA_00131at 141.401 kb on + strand, within CCNA_00131at 141.409 kb on + strand, within CCNA_00131at 141.466 kb on + strand, within CCNA_00131at 141.474 kb on - strand, within CCNA_00131at 141.505 kb on + strandat 141.531 kb on + strandat 141.531 kb on + strandat 141.531 kb on + strandat 141.531 kb on + strandat 141.531 kb on + strandat 141.539 kb on - strandat 141.539 kb on - strandat 141.539 kb on - strandat 141.553 kb on + strandat 141.570 kb on + strandat 141.577 kb on + strandat 141.643 kb on + strandat 141.659 kb on - strandat 141.661 kb on - strandat 141.695 kb on + strandat 141.700 kb on + strandat 141.710 kb on + strandat 141.722 kb on + strand, within CCNA_00132at 141.722 kb on + strand, within CCNA_00132at 141.769 kb on + strand, within CCNA_00132at 141.794 kb on + strand, within CCNA_00132at 141.808 kb on + strand, within CCNA_00132at 141.816 kb on - strand, within CCNA_00132at 141.851 kb on - strand, within CCNA_00132at 141.875 kb on + strand, within CCNA_00132at 141.890 kb on - strand, within CCNA_00132at 141.895 kb on - strand, within CCNA_00132at 141.909 kb on - strand, within CCNA_00132at 141.911 kb on + strand, within CCNA_00132at 141.911 kb on + strand, within CCNA_00132at 141.911 kb on + strand, within CCNA_00132at 141.912 kb on + strand, within CCNA_00132at 141.919 kb on - strand, within CCNA_00132at 141.919 kb on - strand, within CCNA_00132at 141.920 kb on - strand, within CCNA_00132at 141.920 kb on - strand, within CCNA_00132at 141.947 kb on + strand, within CCNA_00132at 141.947 kb on + strand, within CCNA_00132at 141.955 kb on - strand, within CCNA_00132at 141.955 kb on - strand, within CCNA_00132at 141.966 kb on + strand, within CCNA_00132at 141.966 kb on + strand, within CCNA_00132at 141.999 kb on + strand, within CCNA_00132at 142.013 kb on + strand, within CCNA_00132at 142.015 kb on - strand, within CCNA_00132at 142.024 kb on + strand, within CCNA_00132at 142.027 kb on - strand, within CCNA_00132at 142.068 kb on - strand, within CCNA_00132at 142.087 kb on + strand, within CCNA_00132at 142.095 kb on - strand, within CCNA_00132at 142.101 kb on + strand, within CCNA_00132at 142.109 kb on - strand, within CCNA_00132at 142.126 kb on + strand, within CCNA_00132at 142.132 kb on - strand, within CCNA_00132at 142.180 kb on + strand, within CCNA_00132at 142.183 kb on - strand, within CCNA_00132at 142.185 kb on + strand, within CCNA_00132at 142.193 kb on - strand, within CCNA_00132at 142.193 kb on - strand, within CCNA_00132at 142.193 kb on - strand, within CCNA_00132at 142.193 kb on - strand, within CCNA_00132at 142.245 kb on - strand, within CCNA_00132at 142.340 kb on + strand, within CCNA_00132at 142.340 kb on + strand, within CCNA_00132at 142.379 kb on + strandat 142.386 kb on + strandat 142.428 kb on + strandat 142.436 kb on - strandat 142.436 kb on - strandat 142.436 kb on - strandat 142.436 kb on - strandat 142.522 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep2 58 days
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141,004 + +0.8
141,048 + -1.5
141,157 - +0.5
141,192 - CCNA_00131 0.17 +3.1
141,210 + CCNA_00131 0.22 -2.8
141,210 + CCNA_00131 0.22 -1.8
141,259 + CCNA_00131 0.33 -0.9
141,259 + CCNA_00131 0.33 +0.5
141,264 + CCNA_00131 0.34 -0.3
141,264 + CCNA_00131 0.34 -0.6
141,264 + CCNA_00131 0.34 -4.6
141,267 - CCNA_00131 0.35 +0.5
141,272 - CCNA_00131 0.36 -2.6
141,274 + CCNA_00131 0.37 -2.5
141,274 + CCNA_00131 0.37 -2.9
141,279 + CCNA_00131 0.38 -1.3
141,292 - CCNA_00131 0.41 -1.7
141,292 - CCNA_00131 0.41 +1.6
141,318 + CCNA_00131 0.47 -2.3
141,328 + CCNA_00131 0.49 -0.8
141,328 + CCNA_00131 0.49 +0.5
141,328 + CCNA_00131 0.49 -1.1
141,345 + CCNA_00131 0.53 -2.9
141,370 - CCNA_00131 0.59 +2.1
141,370 - CCNA_00131 0.59 -3.3
141,372 - CCNA_00131 0.60 -3.1
141,381 + CCNA_00131 0.62 -2.6
141,401 + CCNA_00131 0.67 -2.3
141,409 + CCNA_00131 0.69 -2.6
141,466 + CCNA_00131 0.82 -2.5
141,474 - CCNA_00131 0.84 +2.1
141,505 + +2.1
141,531 + -0.6
141,531 + -0.1
141,531 + -0.2
141,531 + +0.7
141,531 + +1.4
141,539 - -2.3
141,539 - -2.3
141,539 - +3.1
141,553 + -0.3
141,570 + +0.9
141,577 + -0.2
141,643 + +0.7
141,659 - +2.1
141,661 - +0.6
141,695 + -0.4
141,700 + +0.7
141,710 + +1.0
141,722 + CCNA_00132 0.11 +0.1
141,722 + CCNA_00132 0.11 +0.2
141,769 + CCNA_00132 0.17 +1.3
141,794 + CCNA_00132 0.20 +1.0
141,808 + CCNA_00132 0.22 +0.2
141,816 - CCNA_00132 0.23 +0.2
141,851 - CCNA_00132 0.27 -1.5
141,875 + CCNA_00132 0.30 -0.7
141,890 - CCNA_00132 0.32 -0.2
141,895 - CCNA_00132 0.33 -1.8
141,909 - CCNA_00132 0.34 -0.4
141,911 + CCNA_00132 0.35 +1.3
141,911 + CCNA_00132 0.35 -1.1
141,911 + CCNA_00132 0.35 -0.1
141,912 + CCNA_00132 0.35 +1.7
141,919 - CCNA_00132 0.36 -1.2
141,919 - CCNA_00132 0.36 +0.1
141,920 - CCNA_00132 0.36 +1.6
141,920 - CCNA_00132 0.36 +0.5
141,947 + CCNA_00132 0.39 -0.3
141,947 + CCNA_00132 0.39 +3.1
141,955 - CCNA_00132 0.40 +0.6
141,955 - CCNA_00132 0.40 +1.1
141,966 + CCNA_00132 0.42 +1.1
141,966 + CCNA_00132 0.42 +1.1
141,999 + CCNA_00132 0.46 +0.9
142,013 + CCNA_00132 0.47 +0.5
142,015 - CCNA_00132 0.48 -1.6
142,024 + CCNA_00132 0.49 +0.2
142,027 - CCNA_00132 0.49 -0.7
142,068 - CCNA_00132 0.54 +1.4
142,087 + CCNA_00132 0.57 -1.6
142,095 - CCNA_00132 0.58 -2.7
142,101 + CCNA_00132 0.58 +0.3
142,109 - CCNA_00132 0.59 +1.2
142,126 + CCNA_00132 0.62 -0.7
142,132 - CCNA_00132 0.62 -1.6
142,180 + CCNA_00132 0.68 +0.6
142,183 - CCNA_00132 0.69 +0.5
142,185 + CCNA_00132 0.69 -0.4
142,193 - CCNA_00132 0.70 -1.8
142,193 - CCNA_00132 0.70 +0.5
142,193 - CCNA_00132 0.70 -1.3
142,193 - CCNA_00132 0.70 +1.6
142,245 - CCNA_00132 0.76 +3.6
142,340 + CCNA_00132 0.88 +0.5
142,340 + CCNA_00132 0.88 +1.1
142,379 + -1.4
142,386 + +0.8
142,428 + -0.1
142,436 - -1.6
142,436 - -0.1
142,436 - -0.6
142,436 - -2.1
142,522 - -1.4

Or see this region's nucleotide sequence