Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22460

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22455 and BWI76_RS22460 are separated by 71 nucleotidesBWI76_RS22460 and BWI76_RS22465 overlap by 4 nucleotidesBWI76_RS22465 and BWI76_RS22470 overlap by 1 nucleotides BWI76_RS22455: BWI76_RS22455 - TonB-dependent receptor, at 4,680,632 to 4,683,001 _RS22455 BWI76_RS22460: BWI76_RS22460 - hemin-degrading factor, at 4,683,073 to 4,684,113 _RS22460 BWI76_RS22465: BWI76_RS22465 - hemin ABC transporter substrate-binding protein, at 4,684,110 to 4,684,928 _RS22465 BWI76_RS22470: BWI76_RS22470 - transporter permease, at 4,684,928 to 4,685,923 _RS22470 Position (kb) 4683 4684 4685Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4682.121 kb on - strand, within BWI76_RS22455at 4682.338 kb on + strand, within BWI76_RS22455at 4682.338 kb on + strand, within BWI76_RS22455at 4682.511 kb on + strand, within BWI76_RS22455at 4682.529 kb on - strand, within BWI76_RS22455at 4682.553 kb on - strand, within BWI76_RS22455at 4682.806 kb on + strandat 4683.383 kb on + strandat 4683.500 kb on - strand, within BWI76_RS22460at 4683.555 kb on + strand, within BWI76_RS22460at 4683.563 kb on - strand, within BWI76_RS22460at 4683.674 kb on - strand, within BWI76_RS22460at 4683.840 kb on - strand, within BWI76_RS22460at 4683.947 kb on - strand, within BWI76_RS22460at 4684.023 kb on + strandat 4684.030 kb on + strandat 4684.031 kb on - strandat 4684.031 kb on - strandat 4684.067 kb on + strandat 4684.280 kb on - strand, within BWI76_RS22465at 4684.360 kb on - strandat 4684.406 kb on + strand, within BWI76_RS22465at 4684.519 kb on + strand, within BWI76_RS22465at 4684.521 kb on - strand, within BWI76_RS22465at 4684.663 kb on + strand, within BWI76_RS22465at 4684.810 kb on - strand, within BWI76_RS22465at 4684.872 kb on - strandat 4685.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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4,682,121 - BWI76_RS22455 0.63 +0.9
4,682,338 + BWI76_RS22455 0.72 +1.3
4,682,338 + BWI76_RS22455 0.72 +1.5
4,682,511 + BWI76_RS22455 0.79 -3.3
4,682,529 - BWI76_RS22455 0.80 -0.1
4,682,553 - BWI76_RS22455 0.81 -0.6
4,682,806 + +1.3
4,683,383 + +4.4
4,683,500 - BWI76_RS22460 0.41 -1.0
4,683,555 + BWI76_RS22460 0.46 -0.1
4,683,563 - BWI76_RS22460 0.47 -1.5
4,683,674 - BWI76_RS22460 0.58 +0.3
4,683,840 - BWI76_RS22460 0.74 -2.9
4,683,947 - BWI76_RS22460 0.84 -1.9
4,684,023 + -1.1
4,684,030 + -2.5
4,684,031 - -0.8
4,684,031 - +0.7
4,684,067 + -0.9
4,684,280 - BWI76_RS22465 0.21 -0.6
4,684,360 - +1.8
4,684,406 + BWI76_RS22465 0.36 -0.0
4,684,519 + BWI76_RS22465 0.50 -0.1
4,684,521 - BWI76_RS22465 0.50 -0.5
4,684,663 + BWI76_RS22465 0.68 -0.7
4,684,810 - BWI76_RS22465 0.85 +1.1
4,684,872 - -0.5
4,685,003 - -0.2

Or see this region's nucleotide sequence