Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21010

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21005 and BWI76_RS21010 are separated by 370 nucleotidesBWI76_RS21010 and BWI76_RS21015 are separated by 16 nucleotides BWI76_RS21005: BWI76_RS21005 - sensor domain-containing phosphodiesterase, at 4,393,894 to 4,396,116 _RS21005 BWI76_RS21010: BWI76_RS21010 - Negative regulator of nickel and cobalt uptake (YfgG) (from data), at 4,396,487 to 4,396,678 _RS21010 BWI76_RS21015: BWI76_RS21015 - LysR family transcriptional regulator, at 4,396,695 to 4,397,582 _RS21015 Position (kb) 4396 4397Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4395.592 kb on - strand, within BWI76_RS21005at 4395.596 kb on + strand, within BWI76_RS21005at 4395.596 kb on + strandat 4395.604 kb on - strand, within BWI76_RS21005at 4395.604 kb on - strand, within BWI76_RS21005at 4395.604 kb on - strand, within BWI76_RS21005at 4395.604 kb on - strand, within BWI76_RS21005at 4395.604 kb on - strand, within BWI76_RS21005at 4395.604 kb on - strand, within BWI76_RS21005at 4395.604 kb on - strand, within BWI76_RS21005at 4395.604 kb on - strand, within BWI76_RS21005at 4395.611 kb on - strand, within BWI76_RS21005at 4395.612 kb on - strand, within BWI76_RS21005at 4395.614 kb on - strand, within BWI76_RS21005at 4395.614 kb on - strand, within BWI76_RS21005at 4395.614 kb on - strand, within BWI76_RS21005at 4395.630 kb on + strand, within BWI76_RS21005at 4395.638 kb on - strand, within BWI76_RS21005at 4395.639 kb on + strand, within BWI76_RS21005at 4395.647 kb on - strand, within BWI76_RS21005at 4395.647 kb on - strand, within BWI76_RS21005at 4395.647 kb on - strand, within BWI76_RS21005at 4395.649 kb on + strand, within BWI76_RS21005at 4395.649 kb on + strand, within BWI76_RS21005at 4395.657 kb on - strand, within BWI76_RS21005at 4395.662 kb on - strand, within BWI76_RS21005at 4395.662 kb on - strand, within BWI76_RS21005at 4395.674 kb on + strand, within BWI76_RS21005at 4395.674 kb on + strand, within BWI76_RS21005at 4395.682 kb on - strand, within BWI76_RS21005at 4395.685 kb on - strandat 4395.707 kb on + strand, within BWI76_RS21005at 4395.828 kb on - strand, within BWI76_RS21005at 4395.873 kb on + strand, within BWI76_RS21005at 4395.873 kb on + strand, within BWI76_RS21005at 4395.873 kb on + strand, within BWI76_RS21005at 4395.881 kb on - strand, within BWI76_RS21005at 4395.881 kb on - strand, within BWI76_RS21005at 4395.881 kb on - strand, within BWI76_RS21005at 4395.883 kb on + strand, within BWI76_RS21005at 4395.885 kb on + strand, within BWI76_RS21005at 4395.890 kb on + strand, within BWI76_RS21005at 4395.893 kb on - strand, within BWI76_RS21005at 4395.898 kb on - strandat 4395.919 kb on + strandat 4395.922 kb on - strandat 4395.945 kb on + strandat 4395.945 kb on + strandat 4395.952 kb on + strandat 4395.957 kb on + strandat 4395.957 kb on + strandat 4395.963 kb on - strandat 4395.964 kb on + strandat 4395.965 kb on - strandat 4395.965 kb on - strandat 4395.969 kb on + strandat 4395.972 kb on - strandat 4395.972 kb on - strandat 4395.984 kb on + strandat 4396.013 kb on - strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.016 kb on + strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.024 kb on - strandat 4396.033 kb on - strandat 4396.038 kb on - strandat 4396.039 kb on + strandat 4396.039 kb on + strandat 4396.047 kb on - strandat 4396.052 kb on + strandat 4396.052 kb on + strandat 4396.052 kb on + strandat 4396.052 kb on + strandat 4396.052 kb on + strandat 4396.060 kb on - strandat 4396.060 kb on - strandat 4396.060 kb on - strandat 4396.060 kb on - strandat 4396.092 kb on + strandat 4396.099 kb on - strandat 4396.099 kb on - strandat 4396.101 kb on - strandat 4396.128 kb on + strandat 4396.131 kb on - strandat 4396.134 kb on + strandat 4396.135 kb on + strandat 4396.142 kb on - strandat 4396.143 kb on - strandat 4396.148 kb on + strandat 4396.148 kb on + strandat 4396.156 kb on - strandat 4396.156 kb on - strandat 4396.156 kb on - strandat 4396.156 kb on - strandat 4396.167 kb on - strandat 4396.173 kb on - strandat 4396.183 kb on - strandat 4396.192 kb on + strandat 4396.192 kb on + strandat 4396.194 kb on + strandat 4396.200 kb on - strandat 4396.200 kb on - strandat 4396.200 kb on - strandat 4396.207 kb on + strandat 4396.210 kb on - strandat 4396.210 kb on - strandat 4396.316 kb on + strandat 4396.317 kb on - strandat 4396.324 kb on - strandat 4396.394 kb on + strandat 4396.394 kb on + strandat 4396.402 kb on - strandat 4396.408 kb on + strandat 4396.408 kb on + strandat 4396.411 kb on - strandat 4396.416 kb on - strandat 4396.418 kb on + strandat 4396.421 kb on - strandat 4396.426 kb on - strandat 4396.426 kb on - strandat 4396.431 kb on - strandat 4396.452 kb on + strandat 4396.460 kb on - strandat 4396.481 kb on + strandat 4396.483 kb on + strandat 4396.489 kb on - strandat 4396.503 kb on + strandat 4396.529 kb on - strand, within BWI76_RS21010at 4396.542 kb on + strand, within BWI76_RS21010at 4396.549 kb on - strandat 4396.562 kb on - strand, within BWI76_RS21010at 4396.568 kb on + strand, within BWI76_RS21010at 4396.643 kb on - strand, within BWI76_RS21010at 4396.652 kb on - strand, within BWI76_RS21010at 4396.861 kb on + strand, within BWI76_RS21015at 4396.864 kb on - strand, within BWI76_RS21015at 4396.877 kb on - strand, within BWI76_RS21015at 4396.908 kb on - strand, within BWI76_RS21015at 4396.909 kb on - strand, within BWI76_RS21015at 4396.917 kb on + strand, within BWI76_RS21015at 4396.947 kb on - strand, within BWI76_RS21015at 4397.468 kb on + strand, within BWI76_RS21015at 4397.480 kb on - strand, within BWI76_RS21015at 4397.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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4,395,592 - BWI76_RS21005 0.76 +2.3
4,395,596 + BWI76_RS21005 0.77 +2.5
4,395,596 + +1.8
4,395,604 - BWI76_RS21005 0.77 +1.6
4,395,604 - BWI76_RS21005 0.77 +4.1
4,395,604 - BWI76_RS21005 0.77 -0.4
4,395,604 - BWI76_RS21005 0.77 +2.2
4,395,604 - BWI76_RS21005 0.77 -0.2
4,395,604 - BWI76_RS21005 0.77 +3.3
4,395,604 - BWI76_RS21005 0.77 -0.1
4,395,604 - BWI76_RS21005 0.77 +2.2
4,395,611 - BWI76_RS21005 0.77 +0.6
4,395,612 - BWI76_RS21005 0.77 +1.4
4,395,614 - BWI76_RS21005 0.77 +5.1
4,395,614 - BWI76_RS21005 0.77 +1.1
4,395,614 - BWI76_RS21005 0.77 +2.4
4,395,630 + BWI76_RS21005 0.78 +2.9
4,395,638 - BWI76_RS21005 0.78 +1.7
4,395,639 + BWI76_RS21005 0.78 +1.6
4,395,647 - BWI76_RS21005 0.79 -0.5
4,395,647 - BWI76_RS21005 0.79 -1.3
4,395,647 - BWI76_RS21005 0.79 +1.7
4,395,649 + BWI76_RS21005 0.79 +1.6
4,395,649 + BWI76_RS21005 0.79 +0.4
4,395,657 - BWI76_RS21005 0.79 -0.5
4,395,662 - BWI76_RS21005 0.80 +1.9
4,395,662 - BWI76_RS21005 0.80 -0.7
4,395,674 + BWI76_RS21005 0.80 +1.5
4,395,674 + BWI76_RS21005 0.80 +0.5
4,395,682 - BWI76_RS21005 0.80 +1.9
4,395,685 - +0.8
4,395,707 + BWI76_RS21005 0.82 +2.8
4,395,828 - BWI76_RS21005 0.87 +1.4
4,395,873 + BWI76_RS21005 0.89 +1.5
4,395,873 + BWI76_RS21005 0.89 +1.0
4,395,873 + BWI76_RS21005 0.89 +1.4
4,395,881 - BWI76_RS21005 0.89 +1.8
4,395,881 - BWI76_RS21005 0.89 -2.0
4,395,881 - BWI76_RS21005 0.89 +0.0
4,395,883 + BWI76_RS21005 0.89 -0.2
4,395,885 + BWI76_RS21005 0.90 +2.0
4,395,890 + BWI76_RS21005 0.90 -1.0
4,395,893 - BWI76_RS21005 0.90 +0.6
4,395,898 - +2.6
4,395,919 + +1.4
4,395,922 - +1.7
4,395,945 + -0.4
4,395,945 + -0.5
4,395,952 + +1.3
4,395,957 + +2.1
4,395,957 + +0.8
4,395,963 - +1.5
4,395,964 + +1.2
4,395,965 - +0.8
4,395,965 - +0.5
4,395,969 + -0.9
4,395,972 - +1.2
4,395,972 - +0.0
4,395,984 + -0.9
4,396,013 - -2.1
4,396,016 + +1.2
4,396,016 + +0.2
4,396,016 + +1.1
4,396,016 + +0.5
4,396,016 + +1.9
4,396,016 + +0.9
4,396,016 + +0.1
4,396,016 + +2.0
4,396,016 + +1.1
4,396,016 + +1.7
4,396,016 + +0.5
4,396,016 + +4.8
4,396,024 - +0.7
4,396,024 - +3.6
4,396,024 - +2.8
4,396,024 - +1.5
4,396,024 - -1.7
4,396,024 - +2.5
4,396,024 - +1.6
4,396,024 - +1.9
4,396,024 - +2.3
4,396,024 - +0.8
4,396,024 - +1.1
4,396,024 - +4.3
4,396,024 - +1.9
4,396,024 - -0.8
4,396,024 - +0.2
4,396,024 - +2.2
4,396,024 - +1.9
4,396,033 - +1.0
4,396,038 - +1.1
4,396,039 + +1.0
4,396,039 + +1.3
4,396,047 - +0.1
4,396,052 + +0.5
4,396,052 + +2.8
4,396,052 + +1.6
4,396,052 + +1.1
4,396,052 + +2.8
4,396,060 - +2.8
4,396,060 - +1.5
4,396,060 - +4.3
4,396,060 - -1.4
4,396,092 + +2.0
4,396,099 - +1.0
4,396,099 - +1.8
4,396,101 - +1.2
4,396,128 + +1.8
4,396,131 - +3.3
4,396,134 + +1.4
4,396,135 + -0.8
4,396,142 - -1.8
4,396,143 - -1.2
4,396,148 + -2.2
4,396,148 + -1.7
4,396,156 - +2.5
4,396,156 - +1.2
4,396,156 - +0.6
4,396,156 - +1.2
4,396,167 - +1.9
4,396,173 - +1.7
4,396,183 - +0.8
4,396,192 + +1.1
4,396,192 + +2.3
4,396,194 + +0.2
4,396,200 - +1.9
4,396,200 - +1.8
4,396,200 - +2.2
4,396,207 + +3.6
4,396,210 - +1.2
4,396,210 - +1.9
4,396,316 + +3.3
4,396,317 - +1.3
4,396,324 - +4.0
4,396,394 + +3.2
4,396,394 + +0.6
4,396,402 - +3.7
4,396,408 + -0.2
4,396,408 + -1.8
4,396,411 - +0.2
4,396,416 - -4.1
4,396,418 + +1.2
4,396,421 - -1.8
4,396,426 - -2.7
4,396,426 - +0.8
4,396,431 - +1.2
4,396,452 + +0.5
4,396,460 - -3.2
4,396,481 + -3.3
4,396,483 + -2.6
4,396,489 - -0.7
4,396,503 + -1.3
4,396,529 - BWI76_RS21010 0.22 -2.3
4,396,542 + BWI76_RS21010 0.29 -1.1
4,396,549 - +0.0
4,396,562 - BWI76_RS21010 0.39 -0.5
4,396,568 + BWI76_RS21010 0.42 -2.1
4,396,643 - BWI76_RS21010 0.81 -2.3
4,396,652 - BWI76_RS21010 0.86 -3.3
4,396,861 + BWI76_RS21015 0.19 +0.5
4,396,864 - BWI76_RS21015 0.19 -0.3
4,396,877 - BWI76_RS21015 0.20 +2.5
4,396,908 - BWI76_RS21015 0.24 -1.4
4,396,909 - BWI76_RS21015 0.24 -0.1
4,396,917 + BWI76_RS21015 0.25 -1.6
4,396,947 - BWI76_RS21015 0.28 +0.5
4,397,468 + BWI76_RS21015 0.87 -2.8
4,397,480 - BWI76_RS21015 0.88 +0.6
4,397,627 + +0.1

Or see this region's nucleotide sequence