Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20390

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20385 and BWI76_RS20390 are separated by 62 nucleotidesBWI76_RS20390 and BWI76_RS20395 are separated by 110 nucleotides BWI76_RS20385: BWI76_RS20385 - aspartate-semialdehyde dehydrogenase, at 4,266,706 to 4,267,719 _RS20385 BWI76_RS20390: BWI76_RS20390 - erythronate-4-phosphate dehydrogenase, at 4,267,782 to 4,268,918 _RS20390 BWI76_RS20395: BWI76_RS20395 - flagella biosynthesis regulator, at 4,269,029 to 4,269,988 _RS20395 Position (kb) 4267 4268 4269Strain fitness (log2 ratio) -2 -1 0 1 2at 4266.788 kb on + strandat 4266.793 kb on + strandat 4266.921 kb on + strand, within BWI76_RS20385at 4266.974 kb on - strand, within BWI76_RS20385at 4267.035 kb on - strand, within BWI76_RS20385at 4267.590 kb on - strand, within BWI76_RS20385at 4267.854 kb on - strandat 4268.307 kb on + strand, within BWI76_RS20390at 4268.380 kb on + strand, within BWI76_RS20390at 4268.541 kb on - strand, within BWI76_RS20390at 4268.862 kb on - strandat 4268.920 kb on + strandat 4268.928 kb on - strandat 4268.929 kb on - strandat 4269.020 kb on + strandat 4269.086 kb on - strandat 4269.090 kb on + strandat 4269.093 kb on - strandat 4269.145 kb on - strand, within BWI76_RS20395at 4269.174 kb on + strand, within BWI76_RS20395at 4269.236 kb on + strand, within BWI76_RS20395at 4269.419 kb on + strand, within BWI76_RS20395at 4269.516 kb on - strand, within BWI76_RS20395at 4269.722 kb on - strand, within BWI76_RS20395

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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4,266,788 + -0.2
4,266,793 + -1.3
4,266,921 + BWI76_RS20385 0.21 -0.7
4,266,974 - BWI76_RS20385 0.26 -0.3
4,267,035 - BWI76_RS20385 0.32 -0.2
4,267,590 - BWI76_RS20385 0.87 +1.1
4,267,854 - +0.5
4,268,307 + BWI76_RS20390 0.46 -1.7
4,268,380 + BWI76_RS20390 0.53 -1.6
4,268,541 - BWI76_RS20390 0.67 -1.9
4,268,862 - +1.5
4,268,920 + -0.7
4,268,928 - +1.3
4,268,929 - +0.1
4,269,020 + -1.2
4,269,086 - +0.1
4,269,090 + -0.8
4,269,093 - +1.0
4,269,145 - BWI76_RS20395 0.12 +0.5
4,269,174 + BWI76_RS20395 0.15 +0.1
4,269,236 + BWI76_RS20395 0.22 +0.6
4,269,419 + BWI76_RS20395 0.41 +1.5
4,269,516 - BWI76_RS20395 0.51 +2.4
4,269,722 - BWI76_RS20395 0.72 +0.5

Or see this region's nucleotide sequence