Experiment: Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18345 and BWI76_RS18350 are separated by 288 nucleotides BWI76_RS18350 and BWI76_RS18355 overlap by 4 nucleotides BWI76_RS18355 and BWI76_RS18360 are separated by 15 nucleotides
BWI76_RS18345: BWI76_RS18345 - transcriptional regulator SdiA, at 3,808,816 to 3,809,538
_RS18345
BWI76_RS18350: BWI76_RS18350 - L-cystine ABC transporter ATP-binding protein YecC, at 3,809,827 to 3,810,579
_RS18350
BWI76_RS18355: BWI76_RS18355 - amino acid ABC transporter permease, at 3,810,576 to 3,811,244
_RS18355
BWI76_RS18360: BWI76_RS18360 - aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein, at 3,811,260 to 3,812,246
_RS18360
Position (kb)
3809
3810
3811 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3808.904 kb on - strand, within BWI76_RS18345 at 3808.957 kb on + strand, within BWI76_RS18345 at 3808.960 kb on - strand, within BWI76_RS18345 at 3809.027 kb on - strand, within BWI76_RS18345 at 3809.045 kb on + strand, within BWI76_RS18345 at 3809.046 kb on + strand, within BWI76_RS18345 at 3809.063 kb on - strand, within BWI76_RS18345 at 3809.063 kb on - strand, within BWI76_RS18345 at 3809.100 kb on + strand, within BWI76_RS18345 at 3809.109 kb on + strand, within BWI76_RS18345 at 3809.110 kb on + strand, within BWI76_RS18345 at 3809.115 kb on + strand, within BWI76_RS18345 at 3809.156 kb on + strand, within BWI76_RS18345 at 3809.164 kb on - strand, within BWI76_RS18345 at 3809.164 kb on - strand, within BWI76_RS18345 at 3809.164 kb on - strand, within BWI76_RS18345 at 3809.164 kb on - strand, within BWI76_RS18345 at 3809.166 kb on + strand, within BWI76_RS18345 at 3809.174 kb on - strand, within BWI76_RS18345 at 3809.174 kb on - strand, within BWI76_RS18345 at 3809.174 kb on - strand, within BWI76_RS18345 at 3809.174 kb on - strand, within BWI76_RS18345 at 3809.174 kb on - strand, within BWI76_RS18345 at 3809.176 kb on - strand, within BWI76_RS18345 at 3809.178 kb on + strand, within BWI76_RS18345 at 3809.292 kb on + strand, within BWI76_RS18345 at 3809.292 kb on + strand, within BWI76_RS18345 at 3809.295 kb on - strand, within BWI76_RS18345 at 3809.300 kb on - strand, within BWI76_RS18345 at 3809.300 kb on - strand, within BWI76_RS18345 at 3809.300 kb on - strand, within BWI76_RS18345 at 3809.336 kb on + strand, within BWI76_RS18345 at 3809.336 kb on + strand, within BWI76_RS18345 at 3809.344 kb on - strand, within BWI76_RS18345 at 3809.344 kb on - strand, within BWI76_RS18345 at 3809.344 kb on - strand, within BWI76_RS18345 at 3809.344 kb on - strand, within BWI76_RS18345 at 3809.344 kb on - strand, within BWI76_RS18345 at 3809.344 kb on - strand, within BWI76_RS18345 at 3809.344 kb on - strand, within BWI76_RS18345 at 3809.349 kb on - strand, within BWI76_RS18345 at 3809.354 kb on + strand, within BWI76_RS18345 at 3809.372 kb on - strand, within BWI76_RS18345 at 3809.372 kb on - strand, within BWI76_RS18345 at 3809.377 kb on - strand, within BWI76_RS18345 at 3809.377 kb on - strand, within BWI76_RS18345 at 3809.387 kb on + strand, within BWI76_RS18345 at 3809.397 kb on + strand, within BWI76_RS18345 at 3809.405 kb on - strand, within BWI76_RS18345 at 3809.405 kb on - strand, within BWI76_RS18345 at 3809.405 kb on - strand, within BWI76_RS18345 at 3809.417 kb on - strand, within BWI76_RS18345 at 3809.469 kb on + strand at 3809.477 kb on - strand at 3809.541 kb on - strand at 3809.548 kb on + strand at 3809.553 kb on - strand at 3809.556 kb on - strand at 3809.556 kb on - strand at 3809.556 kb on - strand at 3809.695 kb on - strand at 3809.698 kb on + strand at 3809.698 kb on + strand at 3809.698 kb on + strand at 3809.706 kb on - strand at 3809.723 kb on + strand at 3809.723 kb on + strand at 3809.723 kb on + strand at 3809.723 kb on + strand at 3809.723 kb on - strand at 3809.731 kb on - strand at 3809.748 kb on - strand at 3809.791 kb on + strand at 3809.799 kb on - strand at 3809.806 kb on + strand at 3809.819 kb on - strand at 3809.861 kb on + strand at 3809.866 kb on + strand at 3810.023 kb on + strand, within BWI76_RS18350 at 3810.198 kb on + strand, within BWI76_RS18350 at 3810.276 kb on + strand, within BWI76_RS18350 at 3810.324 kb on - strand, within BWI76_RS18350 at 3810.357 kb on + strand, within BWI76_RS18350 at 3810.365 kb on - strand, within BWI76_RS18350 at 3810.437 kb on - strand, within BWI76_RS18350 at 3810.518 kb on - strand at 3810.600 kb on + strand at 3810.724 kb on + strand, within BWI76_RS18355 at 3810.737 kb on - strand, within BWI76_RS18355 at 3811.005 kb on - strand, within BWI76_RS18355 at 3811.173 kb on - strand, within BWI76_RS18355 at 3811.226 kb on + strand at 3811.234 kb on - strand at 3811.286 kb on + strand at 3811.486 kb on + strand, within BWI76_RS18360
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM remove 3,808,904 - BWI76_RS18345 0.12 +1.1 3,808,957 + BWI76_RS18345 0.20 -0.0 3,808,960 - BWI76_RS18345 0.20 -1.5 3,809,027 - BWI76_RS18345 0.29 +0.8 3,809,045 + BWI76_RS18345 0.32 -1.6 3,809,046 + BWI76_RS18345 0.32 -1.1 3,809,063 - BWI76_RS18345 0.34 -0.5 3,809,063 - BWI76_RS18345 0.34 -0.0 3,809,100 + BWI76_RS18345 0.39 +0.6 3,809,109 + BWI76_RS18345 0.41 +0.8 3,809,110 + BWI76_RS18345 0.41 +0.1 3,809,115 + BWI76_RS18345 0.41 -1.0 3,809,156 + BWI76_RS18345 0.47 +0.5 3,809,164 - BWI76_RS18345 0.48 -0.5 3,809,164 - BWI76_RS18345 0.48 -1.6 3,809,164 - BWI76_RS18345 0.48 +0.7 3,809,164 - BWI76_RS18345 0.48 +0.8 3,809,166 + BWI76_RS18345 0.48 +4.0 3,809,174 - BWI76_RS18345 0.50 -1.0 3,809,174 - BWI76_RS18345 0.50 -2.8 3,809,174 - BWI76_RS18345 0.50 +0.5 3,809,174 - BWI76_RS18345 0.50 -1.7 3,809,174 - BWI76_RS18345 0.50 -1.0 3,809,176 - BWI76_RS18345 0.50 -1.3 3,809,178 + BWI76_RS18345 0.50 +0.2 3,809,292 + BWI76_RS18345 0.66 -0.6 3,809,292 + BWI76_RS18345 0.66 -0.3 3,809,295 - BWI76_RS18345 0.66 -1.1 3,809,300 - BWI76_RS18345 0.67 -1.9 3,809,300 - BWI76_RS18345 0.67 +0.2 3,809,300 - BWI76_RS18345 0.67 -2.0 3,809,336 + BWI76_RS18345 0.72 -0.3 3,809,336 + BWI76_RS18345 0.72 -1.2 3,809,344 - BWI76_RS18345 0.73 -0.0 3,809,344 - BWI76_RS18345 0.73 -1.6 3,809,344 - BWI76_RS18345 0.73 -0.3 3,809,344 - BWI76_RS18345 0.73 -1.8 3,809,344 - BWI76_RS18345 0.73 -1.8 3,809,344 - BWI76_RS18345 0.73 +0.9 3,809,344 - BWI76_RS18345 0.73 +0.2 3,809,349 - BWI76_RS18345 0.74 -2.1 3,809,354 + BWI76_RS18345 0.74 -0.5 3,809,372 - BWI76_RS18345 0.77 -1.3 3,809,372 - BWI76_RS18345 0.77 -0.2 3,809,377 - BWI76_RS18345 0.78 -1.1 3,809,377 - BWI76_RS18345 0.78 +0.5 3,809,387 + BWI76_RS18345 0.79 -1.1 3,809,397 + BWI76_RS18345 0.80 -2.0 3,809,405 - BWI76_RS18345 0.81 +1.1 3,809,405 - BWI76_RS18345 0.81 -3.5 3,809,405 - BWI76_RS18345 0.81 +1.3 3,809,417 - BWI76_RS18345 0.83 -2.1 3,809,469 + -1.8 3,809,477 - -0.3 3,809,541 - -0.5 3,809,548 + -3.6 3,809,553 - -1.3 3,809,556 - +0.5 3,809,556 - -1.2 3,809,556 - -3.6 3,809,695 - -0.7 3,809,698 + +0.0 3,809,698 + -0.0 3,809,698 + -1.2 3,809,706 - -3.0 3,809,723 + -1.3 3,809,723 + -1.6 3,809,723 + -0.5 3,809,723 + -3.4 3,809,723 - +0.6 3,809,731 - +2.0 3,809,748 - +0.5 3,809,791 + -0.3 3,809,799 - +0.2 3,809,806 + +0.8 3,809,819 - +0.7 3,809,861 + -1.9 3,809,866 + -0.1 3,810,023 + BWI76_RS18350 0.26 -1.3 3,810,198 + BWI76_RS18350 0.49 -3.0 3,810,276 + BWI76_RS18350 0.60 -1.1 3,810,324 - BWI76_RS18350 0.66 -1.1 3,810,357 + BWI76_RS18350 0.70 -2.1 3,810,365 - BWI76_RS18350 0.71 -2.1 3,810,437 - BWI76_RS18350 0.81 -2.7 3,810,518 - -0.2 3,810,600 + +0.3 3,810,724 + BWI76_RS18355 0.22 +0.5 3,810,737 - BWI76_RS18355 0.24 -1.1 3,811,005 - BWI76_RS18355 0.64 +0.3 3,811,173 - BWI76_RS18355 0.89 -2.6 3,811,226 + -1.1 3,811,234 - -0.8 3,811,286 + -4.1 3,811,486 + BWI76_RS18360 0.23 +0.5
Or see this region's nucleotide sequence