Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18350

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18345 and BWI76_RS18350 are separated by 288 nucleotidesBWI76_RS18350 and BWI76_RS18355 overlap by 4 nucleotidesBWI76_RS18355 and BWI76_RS18360 are separated by 15 nucleotides BWI76_RS18345: BWI76_RS18345 - transcriptional regulator SdiA, at 3,808,816 to 3,809,538 _RS18345 BWI76_RS18350: BWI76_RS18350 - L-cystine ABC transporter ATP-binding protein YecC, at 3,809,827 to 3,810,579 _RS18350 BWI76_RS18355: BWI76_RS18355 - amino acid ABC transporter permease, at 3,810,576 to 3,811,244 _RS18355 BWI76_RS18360: BWI76_RS18360 - aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein, at 3,811,260 to 3,812,246 _RS18360 Position (kb) 3809 3810 3811Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3808.904 kb on - strand, within BWI76_RS18345at 3808.957 kb on + strand, within BWI76_RS18345at 3808.960 kb on - strand, within BWI76_RS18345at 3809.027 kb on - strand, within BWI76_RS18345at 3809.045 kb on + strand, within BWI76_RS18345at 3809.046 kb on + strand, within BWI76_RS18345at 3809.063 kb on - strand, within BWI76_RS18345at 3809.063 kb on - strand, within BWI76_RS18345at 3809.100 kb on + strand, within BWI76_RS18345at 3809.109 kb on + strand, within BWI76_RS18345at 3809.110 kb on + strand, within BWI76_RS18345at 3809.115 kb on + strand, within BWI76_RS18345at 3809.156 kb on + strand, within BWI76_RS18345at 3809.164 kb on - strand, within BWI76_RS18345at 3809.164 kb on - strand, within BWI76_RS18345at 3809.164 kb on - strand, within BWI76_RS18345at 3809.164 kb on - strand, within BWI76_RS18345at 3809.166 kb on + strand, within BWI76_RS18345at 3809.174 kb on - strand, within BWI76_RS18345at 3809.174 kb on - strand, within BWI76_RS18345at 3809.174 kb on - strand, within BWI76_RS18345at 3809.174 kb on - strand, within BWI76_RS18345at 3809.174 kb on - strand, within BWI76_RS18345at 3809.176 kb on - strand, within BWI76_RS18345at 3809.178 kb on + strand, within BWI76_RS18345at 3809.292 kb on + strand, within BWI76_RS18345at 3809.292 kb on + strand, within BWI76_RS18345at 3809.295 kb on - strand, within BWI76_RS18345at 3809.300 kb on - strand, within BWI76_RS18345at 3809.300 kb on - strand, within BWI76_RS18345at 3809.300 kb on - strand, within BWI76_RS18345at 3809.336 kb on + strand, within BWI76_RS18345at 3809.336 kb on + strand, within BWI76_RS18345at 3809.344 kb on - strand, within BWI76_RS18345at 3809.344 kb on - strand, within BWI76_RS18345at 3809.344 kb on - strand, within BWI76_RS18345at 3809.344 kb on - strand, within BWI76_RS18345at 3809.344 kb on - strand, within BWI76_RS18345at 3809.344 kb on - strand, within BWI76_RS18345at 3809.344 kb on - strand, within BWI76_RS18345at 3809.349 kb on - strand, within BWI76_RS18345at 3809.354 kb on + strand, within BWI76_RS18345at 3809.372 kb on - strand, within BWI76_RS18345at 3809.372 kb on - strand, within BWI76_RS18345at 3809.377 kb on - strand, within BWI76_RS18345at 3809.377 kb on - strand, within BWI76_RS18345at 3809.387 kb on + strand, within BWI76_RS18345at 3809.397 kb on + strand, within BWI76_RS18345at 3809.405 kb on - strand, within BWI76_RS18345at 3809.405 kb on - strand, within BWI76_RS18345at 3809.405 kb on - strand, within BWI76_RS18345at 3809.417 kb on - strand, within BWI76_RS18345at 3809.469 kb on + strandat 3809.477 kb on - strandat 3809.541 kb on - strandat 3809.548 kb on + strandat 3809.553 kb on - strandat 3809.556 kb on - strandat 3809.556 kb on - strandat 3809.556 kb on - strandat 3809.695 kb on - strandat 3809.698 kb on + strandat 3809.698 kb on + strandat 3809.698 kb on + strandat 3809.706 kb on - strandat 3809.723 kb on + strandat 3809.723 kb on + strandat 3809.723 kb on + strandat 3809.723 kb on + strandat 3809.723 kb on - strandat 3809.731 kb on - strandat 3809.748 kb on - strandat 3809.791 kb on + strandat 3809.799 kb on - strandat 3809.806 kb on + strandat 3809.819 kb on - strandat 3809.861 kb on + strandat 3809.866 kb on + strandat 3810.023 kb on + strand, within BWI76_RS18350at 3810.198 kb on + strand, within BWI76_RS18350at 3810.276 kb on + strand, within BWI76_RS18350at 3810.324 kb on - strand, within BWI76_RS18350at 3810.357 kb on + strand, within BWI76_RS18350at 3810.365 kb on - strand, within BWI76_RS18350at 3810.437 kb on - strand, within BWI76_RS18350at 3810.518 kb on - strandat 3810.600 kb on + strandat 3810.724 kb on + strand, within BWI76_RS18355at 3810.737 kb on - strand, within BWI76_RS18355at 3811.005 kb on - strand, within BWI76_RS18355at 3811.173 kb on - strand, within BWI76_RS18355at 3811.226 kb on + strandat 3811.234 kb on - strandat 3811.286 kb on + strandat 3811.486 kb on + strand, within BWI76_RS18360

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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3,808,904 - BWI76_RS18345 0.12 +1.1
3,808,957 + BWI76_RS18345 0.20 -0.0
3,808,960 - BWI76_RS18345 0.20 -1.5
3,809,027 - BWI76_RS18345 0.29 +0.8
3,809,045 + BWI76_RS18345 0.32 -1.6
3,809,046 + BWI76_RS18345 0.32 -1.1
3,809,063 - BWI76_RS18345 0.34 -0.5
3,809,063 - BWI76_RS18345 0.34 -0.0
3,809,100 + BWI76_RS18345 0.39 +0.6
3,809,109 + BWI76_RS18345 0.41 +0.8
3,809,110 + BWI76_RS18345 0.41 +0.1
3,809,115 + BWI76_RS18345 0.41 -1.0
3,809,156 + BWI76_RS18345 0.47 +0.5
3,809,164 - BWI76_RS18345 0.48 -0.5
3,809,164 - BWI76_RS18345 0.48 -1.6
3,809,164 - BWI76_RS18345 0.48 +0.7
3,809,164 - BWI76_RS18345 0.48 +0.8
3,809,166 + BWI76_RS18345 0.48 +4.0
3,809,174 - BWI76_RS18345 0.50 -1.0
3,809,174 - BWI76_RS18345 0.50 -2.8
3,809,174 - BWI76_RS18345 0.50 +0.5
3,809,174 - BWI76_RS18345 0.50 -1.7
3,809,174 - BWI76_RS18345 0.50 -1.0
3,809,176 - BWI76_RS18345 0.50 -1.3
3,809,178 + BWI76_RS18345 0.50 +0.2
3,809,292 + BWI76_RS18345 0.66 -0.6
3,809,292 + BWI76_RS18345 0.66 -0.3
3,809,295 - BWI76_RS18345 0.66 -1.1
3,809,300 - BWI76_RS18345 0.67 -1.9
3,809,300 - BWI76_RS18345 0.67 +0.2
3,809,300 - BWI76_RS18345 0.67 -2.0
3,809,336 + BWI76_RS18345 0.72 -0.3
3,809,336 + BWI76_RS18345 0.72 -1.2
3,809,344 - BWI76_RS18345 0.73 -0.0
3,809,344 - BWI76_RS18345 0.73 -1.6
3,809,344 - BWI76_RS18345 0.73 -0.3
3,809,344 - BWI76_RS18345 0.73 -1.8
3,809,344 - BWI76_RS18345 0.73 -1.8
3,809,344 - BWI76_RS18345 0.73 +0.9
3,809,344 - BWI76_RS18345 0.73 +0.2
3,809,349 - BWI76_RS18345 0.74 -2.1
3,809,354 + BWI76_RS18345 0.74 -0.5
3,809,372 - BWI76_RS18345 0.77 -1.3
3,809,372 - BWI76_RS18345 0.77 -0.2
3,809,377 - BWI76_RS18345 0.78 -1.1
3,809,377 - BWI76_RS18345 0.78 +0.5
3,809,387 + BWI76_RS18345 0.79 -1.1
3,809,397 + BWI76_RS18345 0.80 -2.0
3,809,405 - BWI76_RS18345 0.81 +1.1
3,809,405 - BWI76_RS18345 0.81 -3.5
3,809,405 - BWI76_RS18345 0.81 +1.3
3,809,417 - BWI76_RS18345 0.83 -2.1
3,809,469 + -1.8
3,809,477 - -0.3
3,809,541 - -0.5
3,809,548 + -3.6
3,809,553 - -1.3
3,809,556 - +0.5
3,809,556 - -1.2
3,809,556 - -3.6
3,809,695 - -0.7
3,809,698 + +0.0
3,809,698 + -0.0
3,809,698 + -1.2
3,809,706 - -3.0
3,809,723 + -1.3
3,809,723 + -1.6
3,809,723 + -0.5
3,809,723 + -3.4
3,809,723 - +0.6
3,809,731 - +2.0
3,809,748 - +0.5
3,809,791 + -0.3
3,809,799 - +0.2
3,809,806 + +0.8
3,809,819 - +0.7
3,809,861 + -1.9
3,809,866 + -0.1
3,810,023 + BWI76_RS18350 0.26 -1.3
3,810,198 + BWI76_RS18350 0.49 -3.0
3,810,276 + BWI76_RS18350 0.60 -1.1
3,810,324 - BWI76_RS18350 0.66 -1.1
3,810,357 + BWI76_RS18350 0.70 -2.1
3,810,365 - BWI76_RS18350 0.71 -2.1
3,810,437 - BWI76_RS18350 0.81 -2.7
3,810,518 - -0.2
3,810,600 + +0.3
3,810,724 + BWI76_RS18355 0.22 +0.5
3,810,737 - BWI76_RS18355 0.24 -1.1
3,811,005 - BWI76_RS18355 0.64 +0.3
3,811,173 - BWI76_RS18355 0.89 -2.6
3,811,226 + -1.1
3,811,234 - -0.8
3,811,286 + -4.1
3,811,486 + BWI76_RS18360 0.23 +0.5

Or see this region's nucleotide sequence