Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18065

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18055 and BWI76_RS18060 are separated by 4 nucleotidesBWI76_RS18060 and BWI76_RS18065 are separated by 135 nucleotidesBWI76_RS18065 and BWI76_RS18070 are separated by 78 nucleotidesBWI76_RS18070 and BWI76_RS18075 are separated by 6 nucleotides BWI76_RS18055: BWI76_RS18055 - copper resistance protein D, at 3,752,076 to 3,752,945 _RS18055 BWI76_RS18060: BWI76_RS18060 - hypothetical protein, at 3,752,950 to 3,753,324 _RS18060 BWI76_RS18065: BWI76_RS18065 - DNA polymerase III subunit theta, at 3,753,460 to 3,753,690 _RS18065 BWI76_RS18070: BWI76_RS18070 - DNA polymerase III subunit epsilon, at 3,753,769 to 3,754,428 _RS18070 BWI76_RS18075: BWI76_RS18075 - oligopeptidase B, at 3,754,435 to 3,756,495 _RS18075 Position (kb) 3753 3754Strain fitness (log2 ratio) -3 -2 -1 0 1at 3752.617 kb on + strand, within BWI76_RS18055at 3752.929 kb on - strandat 3753.135 kb on - strand, within BWI76_RS18060at 3753.172 kb on + strand, within BWI76_RS18060at 3753.197 kb on - strand, within BWI76_RS18060at 3753.367 kb on - strandat 3753.402 kb on + strandat 3753.536 kb on + strand, within BWI76_RS18065at 3753.590 kb on + strandat 3754.286 kb on + strand, within BWI76_RS18070at 3754.287 kb on - strand, within BWI76_RS18070at 3754.293 kb on - strand, within BWI76_RS18070at 3754.385 kb on + strandat 3754.385 kb on + strandat 3754.447 kb on - strandat 3754.661 kb on - strand, within BWI76_RS18075

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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3,752,617 + BWI76_RS18055 0.62 -3.5
3,752,929 - -2.2
3,753,135 - BWI76_RS18060 0.49 +0.4
3,753,172 + BWI76_RS18060 0.59 +0.3
3,753,197 - BWI76_RS18060 0.66 -0.7
3,753,367 - -0.6
3,753,402 + -0.7
3,753,536 + BWI76_RS18065 0.33 -2.9
3,753,590 + +0.4
3,754,286 + BWI76_RS18070 0.78 -0.7
3,754,287 - BWI76_RS18070 0.78 -1.5
3,754,293 - BWI76_RS18070 0.79 +0.7
3,754,385 + +0.3
3,754,385 + -1.0
3,754,447 - +0.3
3,754,661 - BWI76_RS18075 0.11 -0.3

Or see this region's nucleotide sequence