Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17885

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17880 and BWI76_RS17885 are separated by 36 nucleotidesBWI76_RS17885 and BWI76_RS17890 are separated by 446 nucleotides BWI76_RS17880: BWI76_RS17880 - c-di-GMP phosphodiesterase, at 3,717,971 to 3,719,536 _RS17880 BWI76_RS17885: BWI76_RS17885 - hypothetical protein, at 3,719,573 to 3,721,132 _RS17885 BWI76_RS17890: BWI76_RS17890 - PTS mannose transporter subunit EIIAB, at 3,721,579 to 3,722,547 _RS17890 Position (kb) 3719 3720 3721 3722Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3718.667 kb on - strand, within BWI76_RS17880at 3718.890 kb on - strand, within BWI76_RS17880at 3718.952 kb on - strand, within BWI76_RS17880at 3719.698 kb on - strandat 3719.782 kb on + strand, within BWI76_RS17885at 3719.966 kb on + strand, within BWI76_RS17885at 3720.192 kb on - strand, within BWI76_RS17885at 3720.228 kb on - strand, within BWI76_RS17885at 3720.252 kb on - strand, within BWI76_RS17885at 3720.345 kb on - strand, within BWI76_RS17885at 3720.559 kb on + strand, within BWI76_RS17885at 3720.615 kb on + strand, within BWI76_RS17885at 3720.786 kb on + strand, within BWI76_RS17885at 3721.179 kb on - strandat 3721.263 kb on + strandat 3721.276 kb on + strandat 3721.282 kb on + strandat 3721.375 kb on - strandat 3721.460 kb on - strandat 3721.487 kb on + strandat 3721.535 kb on + strandat 3721.543 kb on - strandat 3721.543 kb on - strandat 3721.571 kb on + strandat 3721.700 kb on + strand, within BWI76_RS17890at 3721.880 kb on + strand, within BWI76_RS17890at 3722.048 kb on + strand, within BWI76_RS17890

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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3,718,667 - BWI76_RS17880 0.44 -1.9
3,718,890 - BWI76_RS17880 0.59 +0.5
3,718,952 - BWI76_RS17880 0.63 +0.3
3,719,698 - +2.9
3,719,782 + BWI76_RS17885 0.13 +2.3
3,719,966 + BWI76_RS17885 0.25 +2.3
3,720,192 - BWI76_RS17885 0.40 +2.1
3,720,228 - BWI76_RS17885 0.42 +0.1
3,720,252 - BWI76_RS17885 0.44 +1.3
3,720,345 - BWI76_RS17885 0.49 +1.7
3,720,559 + BWI76_RS17885 0.63 +2.1
3,720,615 + BWI76_RS17885 0.67 +2.4
3,720,786 + BWI76_RS17885 0.78 +3.2
3,721,179 - -0.8
3,721,263 + +2.1
3,721,276 + +2.6
3,721,282 + +1.2
3,721,375 - -2.1
3,721,460 - -0.8
3,721,487 + +0.4
3,721,535 + +0.7
3,721,543 - +0.3
3,721,543 - -1.4
3,721,571 + +1.4
3,721,700 + BWI76_RS17890 0.12 +0.4
3,721,880 + BWI76_RS17890 0.31 +0.5
3,722,048 + BWI76_RS17890 0.48 +0.1

Or see this region's nucleotide sequence