Experiment: Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16450 and BWI76_RS16455 overlap by 8 nucleotides BWI76_RS16455 and BWI76_RS16460 are separated by 59 nucleotides BWI76_RS16460 and BWI76_RS16465 are separated by 48 nucleotides BWI76_RS16465 and BWI76_RS16470 are separated by 142 nucleotides
BWI76_RS16450: BWI76_RS16450 - fusaric acid resistance protein, at 3,411,518 to 3,413,542
_RS16450
BWI76_RS16455: BWI76_RS16455 - superoxide dismutase, at 3,413,535 to 3,414,056
_RS16455
BWI76_RS16460: BWI76_RS16460 - oxidoreductase, at 3,414,116 to 3,415,012
_RS16460
BWI76_RS16465: BWI76_RS16465 - DUF1289 domain-containing protein, at 3,415,061 to 3,415,300
_RS16465
BWI76_RS16470: BWI76_RS16470 - transcriptional repressor NemR, at 3,415,443 to 3,416,042
_RS16470
Position (kb)
3414
3415
3416 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3413.343 kb on - strand at 3413.361 kb on + strand at 3413.382 kb on + strand at 3413.390 kb on - strand at 3413.729 kb on + strand, within BWI76_RS16455 at 3413.749 kb on + strand, within BWI76_RS16455 at 3414.262 kb on + strand, within BWI76_RS16460 at 3414.272 kb on - strand, within BWI76_RS16460 at 3414.814 kb on - strand, within BWI76_RS16460 at 3414.983 kb on + strand at 3415.448 kb on + strand at 3415.499 kb on + strand at 3415.619 kb on + strand, within BWI76_RS16470
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM remove 3,413,343 - -0.1 3,413,361 + -2.7 3,413,382 + -0.1 3,413,390 - +0.4 3,413,729 + BWI76_RS16455 0.37 +2.1 3,413,749 + BWI76_RS16455 0.41 -0.7 3,414,262 + BWI76_RS16460 0.16 -1.6 3,414,272 - BWI76_RS16460 0.17 -1.2 3,414,814 - BWI76_RS16460 0.78 -1.0 3,414,983 + -0.1 3,415,448 + -1.5 3,415,499 + +0.8 3,415,619 + BWI76_RS16470 0.29 -0.5
Or see this region's nucleotide sequence