Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16305

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16300 and BWI76_RS16305 are separated by 315 nucleotidesBWI76_RS16305 and BWI76_RS16310 are separated by 188 nucleotides BWI76_RS16300: BWI76_RS16300 - bifunctional beta-cystathionase/maltose regulon regulatory protein, at 3,384,179 to 3,385,357 _RS16300 BWI76_RS16305: BWI76_RS16305 - selenium-binding protein YdfZ, at 3,385,673 to 3,385,876 _RS16305 BWI76_RS16310: BWI76_RS16310 - hypothetical protein, at 3,386,065 to 3,387,276 _RS16310 Position (kb) 3385 3386Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3384.710 kb on + strand, within BWI76_RS16300at 3384.859 kb on + strand, within BWI76_RS16300at 3384.859 kb on + strand, within BWI76_RS16300at 3385.327 kb on - strandat 3385.372 kb on + strandat 3385.372 kb on + strandat 3385.380 kb on - strandat 3385.380 kb on - strandat 3385.380 kb on - strandat 3385.380 kb on - strandat 3385.474 kb on + strandat 3385.539 kb on + strandat 3385.547 kb on - strandat 3385.574 kb on + strandat 3385.693 kb on + strandat 3385.693 kb on + strandat 3385.693 kb on + strandat 3385.693 kb on + strandat 3385.699 kb on + strand, within BWI76_RS16305at 3385.701 kb on - strand, within BWI76_RS16305at 3385.727 kb on - strand, within BWI76_RS16305at 3385.727 kb on - strand, within BWI76_RS16305at 3385.742 kb on - strand, within BWI76_RS16305at 3385.751 kb on - strand, within BWI76_RS16305at 3385.761 kb on - strand, within BWI76_RS16305at 3385.774 kb on + strand, within BWI76_RS16305at 3385.782 kb on - strand, within BWI76_RS16305at 3385.787 kb on + strandat 3385.787 kb on + strand, within BWI76_RS16305at 3385.792 kb on + strand, within BWI76_RS16305at 3385.792 kb on + strand, within BWI76_RS16305at 3385.795 kb on - strand, within BWI76_RS16305at 3385.865 kb on + strandat 3385.865 kb on + strandat 3385.865 kb on + strandat 3385.867 kb on - strandat 3385.880 kb on + strandat 3385.891 kb on + strandat 3385.891 kb on + strandat 3385.891 kb on + strandat 3385.891 kb on + strandat 3385.899 kb on - strandat 3385.899 kb on - strandat 3385.916 kb on + strandat 3385.924 kb on + strandat 3385.925 kb on + strandat 3385.925 kb on + strandat 3385.927 kb on + strandat 3385.932 kb on - strandat 3385.934 kb on + strandat 3385.937 kb on - strandat 3385.983 kb on - strandat 3386.031 kb on + strandat 3386.033 kb on + strandat 3386.069 kb on + strandat 3386.069 kb on - strandat 3386.069 kb on - strandat 3386.079 kb on + strandat 3386.086 kb on - strandat 3386.087 kb on - strandat 3386.087 kb on - strandat 3386.143 kb on + strandat 3386.151 kb on - strandat 3386.157 kb on - strandat 3386.157 kb on - strandat 3386.243 kb on + strand, within BWI76_RS16310at 3386.266 kb on - strandat 3386.295 kb on - strand, within BWI76_RS16310at 3386.333 kb on - strand, within BWI76_RS16310at 3386.414 kb on - strand, within BWI76_RS16310at 3386.562 kb on - strand, within BWI76_RS16310

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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3,384,710 + BWI76_RS16300 0.45 -1.8
3,384,859 + BWI76_RS16300 0.58 -0.3
3,384,859 + BWI76_RS16300 0.58 -0.1
3,385,327 - +1.0
3,385,372 + -0.3
3,385,372 + +0.5
3,385,380 - +0.3
3,385,380 - +1.0
3,385,380 - -0.8
3,385,380 - -2.3
3,385,474 + +0.4
3,385,539 + -0.1
3,385,547 - -1.7
3,385,574 + -0.5
3,385,693 + -1.3
3,385,693 + -0.4
3,385,693 + -3.5
3,385,693 + +0.1
3,385,699 + BWI76_RS16305 0.13 -0.3
3,385,701 - BWI76_RS16305 0.14 -1.3
3,385,727 - BWI76_RS16305 0.26 +0.3
3,385,727 - BWI76_RS16305 0.26 +0.1
3,385,742 - BWI76_RS16305 0.34 +0.4
3,385,751 - BWI76_RS16305 0.38 +0.8
3,385,761 - BWI76_RS16305 0.43 -3.2
3,385,774 + BWI76_RS16305 0.50 -1.8
3,385,782 - BWI76_RS16305 0.53 -0.7
3,385,787 + +0.7
3,385,787 + BWI76_RS16305 0.56 +0.8
3,385,792 + BWI76_RS16305 0.58 -0.1
3,385,792 + BWI76_RS16305 0.58 -3.3
3,385,795 - BWI76_RS16305 0.60 +2.2
3,385,865 + -2.7
3,385,865 + -0.7
3,385,865 + -2.7
3,385,867 - +1.0
3,385,880 + +0.3
3,385,891 + -0.7
3,385,891 + +1.0
3,385,891 + +0.9
3,385,891 + -0.2
3,385,899 - +0.4
3,385,899 - +1.4
3,385,916 + +0.0
3,385,924 + -1.8
3,385,925 + -0.2
3,385,925 + +1.1
3,385,927 + -1.4
3,385,932 - -2.5
3,385,934 + +0.4
3,385,937 - +0.4
3,385,983 - +0.5
3,386,031 + -1.6
3,386,033 + +0.9
3,386,069 + +0.1
3,386,069 - +2.5
3,386,069 - +0.4
3,386,079 + +0.2
3,386,086 - +1.0
3,386,087 - +0.0
3,386,087 - -0.7
3,386,143 + -0.7
3,386,151 - +0.1
3,386,157 - +0.4
3,386,157 - +0.6
3,386,243 + BWI76_RS16310 0.15 -3.3
3,386,266 - +0.2
3,386,295 - BWI76_RS16310 0.19 -1.0
3,386,333 - BWI76_RS16310 0.22 -0.3
3,386,414 - BWI76_RS16310 0.29 +1.0
3,386,562 - BWI76_RS16310 0.41 +0.9

Or see this region's nucleotide sequence