Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16075

Experiment: Cobalt chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16070 and BWI76_RS16075 are separated by 222 nucleotidesBWI76_RS16075 and BWI76_RS16080 are separated by 107 nucleotides BWI76_RS16070: BWI76_RS16070 - N-acetylmuramic acid 6-phosphate etherase, at 3,332,242 to 3,333,147 _RS16070 BWI76_RS16075: BWI76_RS16075 - oxidoreductase, at 3,333,370 to 3,334,110 _RS16075 BWI76_RS16080: BWI76_RS16080 - LysR family transcriptional regulator, at 3,334,218 to 3,335,114 _RS16080 Position (kb) 3333 3334 3335Strain fitness (log2 ratio) -2 -1 0 1 2at 3332.387 kb on + strand, within BWI76_RS16070at 3332.387 kb on + strand, within BWI76_RS16070at 3332.387 kb on + strand, within BWI76_RS16070at 3332.410 kb on + strand, within BWI76_RS16070at 3332.465 kb on - strand, within BWI76_RS16070at 3332.467 kb on - strand, within BWI76_RS16070at 3332.713 kb on - strand, within BWI76_RS16070at 3332.927 kb on + strand, within BWI76_RS16070at 3333.112 kb on - strandat 3333.291 kb on + strandat 3333.299 kb on - strandat 3333.926 kb on - strand, within BWI76_RS16075at 3334.261 kb on + strandat 3334.356 kb on + strand, within BWI76_RS16080at 3334.807 kb on - strand, within BWI76_RS16080at 3334.856 kb on - strand, within BWI76_RS16080

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
remove
3,332,387 + BWI76_RS16070 0.16 +0.6
3,332,387 + BWI76_RS16070 0.16 -1.0
3,332,387 + BWI76_RS16070 0.16 -1.3
3,332,410 + BWI76_RS16070 0.19 +1.7
3,332,465 - BWI76_RS16070 0.25 +1.1
3,332,467 - BWI76_RS16070 0.25 -0.4
3,332,713 - BWI76_RS16070 0.52 -1.6
3,332,927 + BWI76_RS16070 0.76 -0.9
3,333,112 - -1.4
3,333,291 + -2.3
3,333,299 - +0.1
3,333,926 - BWI76_RS16075 0.75 +1.8
3,334,261 + -0.6
3,334,356 + BWI76_RS16080 0.15 -0.8
3,334,807 - BWI76_RS16080 0.66 -0.3
3,334,856 - BWI76_RS16080 0.71 +0.6

Or see this region's nucleotide sequence