Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13405

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13400 and BWI76_RS13405 are separated by 365 nucleotidesBWI76_RS13405 and BWI76_RS13410 are separated by 19 nucleotides BWI76_RS13400: BWI76_RS13400 - GntR family transcriptional regulator, at 2,794,325 to 2,795,737 _RS13400 BWI76_RS13405: BWI76_RS13405 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,796,103 to 2,797,248 _RS13405 BWI76_RS13410: BWI76_RS13410 - polyamine ABC transporter ATP-binding protein, at 2,797,268 to 2,798,278 _RS13410 Position (kb) 2796 2797 2798Strain fitness (log2 ratio) -2 -1 0 1 2at 2795.389 kb on + strand, within BWI76_RS13400at 2795.401 kb on + strand, within BWI76_RS13400at 2795.601 kb on - strandat 2795.663 kb on + strandat 2795.736 kb on + strandat 2795.751 kb on + strandat 2795.756 kb on + strandat 2795.772 kb on + strandat 2795.783 kb on + strandat 2796.023 kb on - strandat 2796.092 kb on + strandat 2796.141 kb on + strandat 2796.362 kb on + strand, within BWI76_RS13405at 2796.370 kb on - strand, within BWI76_RS13405at 2796.510 kb on + strand, within BWI76_RS13405at 2796.946 kb on + strand, within BWI76_RS13405at 2796.985 kb on + strand, within BWI76_RS13405at 2797.092 kb on + strand, within BWI76_RS13405at 2797.769 kb on - strand, within BWI76_RS13410at 2797.780 kb on + strand, within BWI76_RS13410at 2797.839 kb on + strand, within BWI76_RS13410

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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2,795,389 + BWI76_RS13400 0.75 -2.4
2,795,401 + BWI76_RS13400 0.76 +0.9
2,795,601 - +1.0
2,795,663 + +0.3
2,795,736 + -1.2
2,795,751 + -0.5
2,795,756 + -0.3
2,795,772 + -1.7
2,795,783 + -1.0
2,796,023 - +0.9
2,796,092 + -1.2
2,796,141 + -0.2
2,796,362 + BWI76_RS13405 0.23 +0.7
2,796,370 - BWI76_RS13405 0.23 -0.5
2,796,510 + BWI76_RS13405 0.36 +0.2
2,796,946 + BWI76_RS13405 0.74 +0.2
2,796,985 + BWI76_RS13405 0.77 +1.8
2,797,092 + BWI76_RS13405 0.86 +1.0
2,797,769 - BWI76_RS13410 0.50 -0.9
2,797,780 + BWI76_RS13410 0.51 +0.1
2,797,839 + BWI76_RS13410 0.56 -0.3

Or see this region's nucleotide sequence