Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12970

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12965 and BWI76_RS12970 are separated by 111 nucleotidesBWI76_RS12970 and BWI76_RS12975 are separated by 54 nucleotides BWI76_RS12965: BWI76_RS12965 - LysR family transcriptional regulator, at 2,702,781 to 2,703,650 _RS12965 BWI76_RS12970: BWI76_RS12970 - MFS transporter, at 2,703,762 to 2,705,198 _RS12970 BWI76_RS12975: BWI76_RS12975 - type I glyceraldehyde-3-phosphate dehydrogenase, at 2,705,253 to 2,706,263 _RS12975 Position (kb) 2703 2704 2705 2706Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2702.779 kb on + strandat 2702.779 kb on + strandat 2703.053 kb on - strand, within BWI76_RS12965at 2703.123 kb on + strand, within BWI76_RS12965at 2703.151 kb on + strand, within BWI76_RS12965at 2703.169 kb on + strand, within BWI76_RS12965at 2703.194 kb on - strand, within BWI76_RS12965at 2703.338 kb on - strand, within BWI76_RS12965at 2703.491 kb on - strand, within BWI76_RS12965at 2703.757 kb on + strandat 2703.937 kb on + strand, within BWI76_RS12970at 2704.208 kb on - strand, within BWI76_RS12970at 2704.340 kb on + strand, within BWI76_RS12970at 2704.441 kb on + strand, within BWI76_RS12970at 2704.556 kb on + strand, within BWI76_RS12970at 2704.587 kb on - strand, within BWI76_RS12970at 2704.587 kb on - strand, within BWI76_RS12970at 2704.593 kb on - strand, within BWI76_RS12970at 2704.597 kb on - strand, within BWI76_RS12970at 2704.681 kb on - strand, within BWI76_RS12970at 2704.742 kb on + strand, within BWI76_RS12970at 2704.757 kb on - strandat 2704.779 kb on - strand, within BWI76_RS12970at 2704.815 kb on - strand, within BWI76_RS12970at 2705.019 kb on + strand, within BWI76_RS12970at 2705.019 kb on + strand, within BWI76_RS12970at 2705.019 kb on + strand, within BWI76_RS12970at 2705.506 kb on - strand, within BWI76_RS12975at 2705.506 kb on - strand, within BWI76_RS12975at 2705.747 kb on - strand, within BWI76_RS12975at 2705.932 kb on + strand, within BWI76_RS12975

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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2,702,779 + -0.7
2,702,779 + -0.5
2,703,053 - BWI76_RS12965 0.31 -0.9
2,703,123 + BWI76_RS12965 0.39 -2.5
2,703,151 + BWI76_RS12965 0.43 +0.9
2,703,169 + BWI76_RS12965 0.45 -1.5
2,703,194 - BWI76_RS12965 0.47 +0.1
2,703,338 - BWI76_RS12965 0.64 -0.7
2,703,491 - BWI76_RS12965 0.82 -1.6
2,703,757 + -0.5
2,703,937 + BWI76_RS12970 0.12 +0.2
2,704,208 - BWI76_RS12970 0.31 -0.4
2,704,340 + BWI76_RS12970 0.40 -0.1
2,704,441 + BWI76_RS12970 0.47 +1.6
2,704,556 + BWI76_RS12970 0.55 -4.3
2,704,587 - BWI76_RS12970 0.57 +0.0
2,704,587 - BWI76_RS12970 0.57 +1.0
2,704,593 - BWI76_RS12970 0.58 +1.7
2,704,597 - BWI76_RS12970 0.58 -0.5
2,704,681 - BWI76_RS12970 0.64 -1.2
2,704,742 + BWI76_RS12970 0.68 +0.2
2,704,757 - +1.7
2,704,779 - BWI76_RS12970 0.71 -1.9
2,704,815 - BWI76_RS12970 0.73 -1.2
2,705,019 + BWI76_RS12970 0.87 -1.2
2,705,019 + BWI76_RS12970 0.87 +1.4
2,705,019 + BWI76_RS12970 0.87 +0.2
2,705,506 - BWI76_RS12975 0.25 -1.7
2,705,506 - BWI76_RS12975 0.25 -0.1
2,705,747 - BWI76_RS12975 0.49 -0.3
2,705,932 + BWI76_RS12975 0.67 -0.6

Or see this region's nucleotide sequence