Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12235

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12225 and BWI76_RS12230 are separated by 481 nucleotidesBWI76_RS12230 and BWI76_RS12235 are separated by 244 nucleotidesBWI76_RS12235 and BWI76_RS12240 are separated by 3 nucleotides BWI76_RS12225: BWI76_RS12225 - hypothetical protein, at 2,556,370 to 2,556,543 _RS12225 BWI76_RS12230: BWI76_RS12230 - hypothetical protein, at 2,557,025 to 2,557,270 _RS12230 BWI76_RS12235: BWI76_RS12235 - hypothetical protein, at 2,557,515 to 2,557,703 _RS12235 BWI76_RS12240: BWI76_RS12240 - terminase small subunit, at 2,557,707 to 2,558,699 _RS12240 Position (kb) 2557 2558Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 2556.576 kb on + strandat 2556.576 kb on + strandat 2556.579 kb on + strandat 2556.579 kb on + strandat 2556.589 kb on + strandat 2556.589 kb on + strandat 2556.591 kb on - strandat 2556.591 kb on - strandat 2556.592 kb on - strandat 2556.592 kb on - strandat 2556.601 kb on - strandat 2556.621 kb on - strandat 2556.636 kb on + strandat 2556.636 kb on + strandat 2556.658 kb on - strandat 2556.662 kb on + strandat 2556.663 kb on - strandat 2556.686 kb on - strandat 2556.767 kb on + strandat 2556.806 kb on + strandat 2556.808 kb on + strandat 2556.808 kb on + strandat 2556.808 kb on + strandat 2556.808 kb on + strandat 2556.816 kb on - strandat 2556.816 kb on - strandat 2556.840 kb on + strandat 2556.841 kb on + strandat 2556.842 kb on + strandat 2556.843 kb on + strandat 2556.843 kb on - strandat 2556.848 kb on - strandat 2556.867 kb on - strandat 2556.867 kb on - strandat 2556.868 kb on - strandat 2556.870 kb on + strandat 2556.870 kb on + strandat 2556.870 kb on + strandat 2556.870 kb on + strandat 2556.870 kb on + strandat 2556.870 kb on + strandat 2556.878 kb on - strandat 2556.878 kb on - strandat 2556.878 kb on - strandat 2556.878 kb on - strandat 2556.878 kb on - strandat 2556.879 kb on - strandat 2556.886 kb on - strandat 2556.889 kb on - strandat 2556.900 kb on - strandat 2556.907 kb on + strandat 2557.064 kb on - strand, within BWI76_RS12230at 2557.081 kb on + strand, within BWI76_RS12230at 2557.118 kb on + strand, within BWI76_RS12230at 2557.118 kb on + strand, within BWI76_RS12230at 2557.123 kb on + strand, within BWI76_RS12230at 2557.126 kb on - strand, within BWI76_RS12230at 2557.126 kb on - strand, within BWI76_RS12230at 2557.208 kb on - strand, within BWI76_RS12230at 2557.211 kb on + strand, within BWI76_RS12230at 2557.216 kb on + strand, within BWI76_RS12230at 2557.219 kb on - strand, within BWI76_RS12230at 2557.219 kb on - strand, within BWI76_RS12230at 2557.236 kb on - strand, within BWI76_RS12230at 2557.248 kb on - strandat 2557.256 kb on + strandat 2557.256 kb on + strandat 2557.256 kb on + strandat 2557.291 kb on - strandat 2557.331 kb on + strandat 2557.331 kb on + strandat 2557.331 kb on + strandat 2557.339 kb on - strandat 2557.346 kb on + strandat 2557.346 kb on + strandat 2557.346 kb on + strandat 2557.346 kb on + strandat 2557.354 kb on - strandat 2557.354 kb on - strandat 2557.354 kb on - strandat 2557.436 kb on + strandat 2557.454 kb on + strandat 2557.454 kb on + strandat 2557.462 kb on - strandat 2557.462 kb on - strandat 2557.462 kb on - strandat 2557.504 kb on + strandat 2557.592 kb on - strand, within BWI76_RS12235at 2557.607 kb on + strand, within BWI76_RS12235at 2557.698 kb on + strandat 2558.012 kb on - strand, within BWI76_RS12240at 2558.021 kb on - strand, within BWI76_RS12240at 2558.146 kb on + strand, within BWI76_RS12240at 2558.232 kb on + strand, within BWI76_RS12240at 2558.335 kb on - strand, within BWI76_RS12240at 2558.356 kb on - strand, within BWI76_RS12240at 2558.412 kb on - strand, within BWI76_RS12240at 2558.594 kb on + strand, within BWI76_RS12240at 2558.687 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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2,556,576 + +0.8
2,556,576 + +0.4
2,556,579 + -0.6
2,556,579 + +1.0
2,556,589 + -0.9
2,556,589 + +0.2
2,556,591 - +0.7
2,556,591 - +9.4
2,556,592 - +0.4
2,556,592 - +1.0
2,556,601 - -0.1
2,556,621 - +1.7
2,556,636 + -0.5
2,556,636 + -3.1
2,556,658 - +0.7
2,556,662 + -0.5
2,556,663 - -0.1
2,556,686 - -0.3
2,556,767 + +1.7
2,556,806 + -1.2
2,556,808 + +0.4
2,556,808 + -1.1
2,556,808 + -1.0
2,556,808 + -0.4
2,556,816 - +0.7
2,556,816 - -2.9
2,556,840 + +1.1
2,556,841 + -0.0
2,556,842 + -1.5
2,556,843 + +0.3
2,556,843 - -0.4
2,556,848 - +0.9
2,556,867 - -0.8
2,556,867 - +1.1
2,556,868 - -2.2
2,556,870 + +0.6
2,556,870 + +2.7
2,556,870 + -0.0
2,556,870 + -1.8
2,556,870 + -1.6
2,556,870 + -0.9
2,556,878 - -0.3
2,556,878 - -0.6
2,556,878 - +0.4
2,556,878 - -0.2
2,556,878 - -0.5
2,556,879 - -2.0
2,556,886 - +0.5
2,556,889 - -2.2
2,556,900 - -2.5
2,556,907 + -0.9
2,557,064 - BWI76_RS12230 0.16 +2.1
2,557,081 + BWI76_RS12230 0.23 -2.4
2,557,118 + BWI76_RS12230 0.38 -1.2
2,557,118 + BWI76_RS12230 0.38 -0.9
2,557,123 + BWI76_RS12230 0.40 -2.1
2,557,126 - BWI76_RS12230 0.41 -0.8
2,557,126 - BWI76_RS12230 0.41 -2.5
2,557,208 - BWI76_RS12230 0.74 +0.8
2,557,211 + BWI76_RS12230 0.76 -1.3
2,557,216 + BWI76_RS12230 0.78 -0.4
2,557,219 - BWI76_RS12230 0.79 -0.5
2,557,219 - BWI76_RS12230 0.79 -2.0
2,557,236 - BWI76_RS12230 0.86 +1.4
2,557,248 - +0.5
2,557,256 + -1.3
2,557,256 + +0.0
2,557,256 + -2.8
2,557,291 - -2.0
2,557,331 + -0.8
2,557,331 + +0.7
2,557,331 + -0.6
2,557,339 - -1.0
2,557,346 + +0.4
2,557,346 + +0.3
2,557,346 + +0.5
2,557,346 + +0.3
2,557,354 - +0.8
2,557,354 - +0.4
2,557,354 - -2.5
2,557,436 + +0.4
2,557,454 + -0.0
2,557,454 + -1.1
2,557,462 - +0.6
2,557,462 - -0.1
2,557,462 - -0.1
2,557,504 + +0.4
2,557,592 - BWI76_RS12235 0.41 -1.2
2,557,607 + BWI76_RS12235 0.49 +0.1
2,557,698 + +2.0
2,558,012 - BWI76_RS12240 0.31 -2.7
2,558,021 - BWI76_RS12240 0.32 +0.1
2,558,146 + BWI76_RS12240 0.44 +1.7
2,558,232 + BWI76_RS12240 0.53 +0.4
2,558,335 - BWI76_RS12240 0.63 +1.6
2,558,356 - BWI76_RS12240 0.65 +0.0
2,558,412 - BWI76_RS12240 0.71 -2.2
2,558,594 + BWI76_RS12240 0.89 -2.0
2,558,687 + -0.7

Or see this region's nucleotide sequence