Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10005

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09995 and BWI76_RS10000 are separated by 28 nucleotidesBWI76_RS10000 and BWI76_RS10005 are separated by 154 nucleotidesBWI76_RS10005 and BWI76_RS10010 are separated by 603 nucleotides BWI76_RS09995: BWI76_RS09995 - DNA helicase IV, at 2,103,951 to 2,106,005 _RS09995 BWI76_RS10000: BWI76_RS10000 - methylglyoxal synthase, at 2,106,034 to 2,106,492 _RS10000 BWI76_RS10005: BWI76_RS10005 - CoA-binding protein, at 2,106,647 to 2,107,060 _RS10005 BWI76_RS10010: BWI76_RS10010 - hypothetical protein, at 2,107,664 to 2,118,601 _RS10010 Position (kb) 2106 2107 2108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2105.879 kb on - strandat 2105.910 kb on + strandat 2105.910 kb on + strandat 2105.918 kb on - strandat 2105.918 kb on - strandat 2106.056 kb on - strandat 2106.128 kb on + strand, within BWI76_RS10000at 2106.128 kb on + strand, within BWI76_RS10000at 2106.197 kb on - strand, within BWI76_RS10000at 2106.197 kb on - strand, within BWI76_RS10000at 2106.269 kb on + strand, within BWI76_RS10000at 2106.277 kb on - strand, within BWI76_RS10000at 2106.323 kb on - strand, within BWI76_RS10000at 2106.323 kb on - strand, within BWI76_RS10000at 2106.323 kb on - strand, within BWI76_RS10000at 2106.447 kb on + strandat 2106.455 kb on - strandat 2106.524 kb on - strandat 2106.582 kb on + strandat 2106.584 kb on - strandat 2106.626 kb on - strandat 2106.708 kb on - strand, within BWI76_RS10005at 2106.708 kb on - strand, within BWI76_RS10005at 2106.720 kb on - strand, within BWI76_RS10005at 2106.772 kb on + strand, within BWI76_RS10005at 2106.801 kb on + strand, within BWI76_RS10005at 2106.804 kb on + strand, within BWI76_RS10005at 2106.817 kb on - strand, within BWI76_RS10005at 2106.882 kb on + strand, within BWI76_RS10005at 2106.905 kb on + strand, within BWI76_RS10005at 2106.949 kb on + strand, within BWI76_RS10005at 2106.985 kb on - strand, within BWI76_RS10005at 2106.998 kb on - strand, within BWI76_RS10005at 2107.007 kb on + strand, within BWI76_RS10005at 2107.042 kb on + strandat 2107.046 kb on + strandat 2107.061 kb on + strandat 2107.061 kb on + strandat 2107.090 kb on - strandat 2107.091 kb on - strandat 2107.091 kb on - strandat 2107.188 kb on - strandat 2107.196 kb on - strandat 2107.559 kb on + strandat 2107.559 kb on + strandat 2107.560 kb on + strandat 2107.560 kb on + strandat 2107.566 kb on + strandat 2107.567 kb on - strandat 2107.568 kb on - strandat 2107.568 kb on - strandat 2107.588 kb on + strandat 2107.588 kb on + strandat 2107.595 kb on - strandat 2107.601 kb on - strandat 2107.627 kb on + strandat 2107.636 kb on - strandat 2107.639 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.646 kb on + strandat 2107.652 kb on - strandat 2107.654 kb on - strandat 2107.654 kb on - strandat 2107.654 kb on - strandat 2107.654 kb on - strandat 2107.654 kb on - strandat 2107.654 kb on - strandat 2107.654 kb on - strandat 2107.654 kb on - strandat 2107.695 kb on - strandat 2107.697 kb on + strandat 2107.698 kb on + strandat 2107.700 kb on + strandat 2107.702 kb on + strandat 2107.710 kb on - strandat 2107.744 kb on + strandat 2107.744 kb on + strandat 2107.752 kb on - strandat 2107.756 kb on + strandat 2107.756 kb on - strandat 2107.769 kb on + strandat 2107.782 kb on - strandat 2107.792 kb on + strandat 2107.799 kb on + strandat 2107.799 kb on + strandat 2107.807 kb on - strandat 2107.808 kb on - strandat 2107.820 kb on + strandat 2107.836 kb on - strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.869 kb on + strandat 2107.877 kb on - strandat 2107.877 kb on - strandat 2107.877 kb on - strandat 2107.877 kb on - strandat 2107.877 kb on - strandat 2107.877 kb on - strandat 2107.887 kb on - strandat 2107.892 kb on + strandat 2107.904 kb on + strandat 2107.917 kb on + strandat 2107.924 kb on - strandat 2107.924 kb on - strandat 2107.924 kb on - strandat 2107.924 kb on - strandat 2107.934 kb on - strandat 2107.935 kb on - strandat 2107.944 kb on - strandat 2107.947 kb on + strandat 2107.950 kb on + strandat 2108.006 kb on + strandat 2108.006 kb on + strandat 2108.006 kb on + strandat 2108.006 kb on + strandat 2108.006 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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2,105,879 - -2.8
2,105,910 + +1.5
2,105,910 + -0.8
2,105,918 - +0.9
2,105,918 - -2.5
2,106,056 - +0.2
2,106,128 + BWI76_RS10000 0.20 -0.5
2,106,128 + BWI76_RS10000 0.20 -0.5
2,106,197 - BWI76_RS10000 0.36 +0.4
2,106,197 - BWI76_RS10000 0.36 -0.2
2,106,269 + BWI76_RS10000 0.51 -0.1
2,106,277 - BWI76_RS10000 0.53 +1.3
2,106,323 - BWI76_RS10000 0.63 -0.7
2,106,323 - BWI76_RS10000 0.63 +1.8
2,106,323 - BWI76_RS10000 0.63 +0.9
2,106,447 + +0.8
2,106,455 - -1.2
2,106,524 - -0.8
2,106,582 + +1.1
2,106,584 - -0.6
2,106,626 - -0.8
2,106,708 - BWI76_RS10005 0.15 -0.2
2,106,708 - BWI76_RS10005 0.15 -1.5
2,106,720 - BWI76_RS10005 0.18 -3.5
2,106,772 + BWI76_RS10005 0.30 +0.2
2,106,801 + BWI76_RS10005 0.37 -0.6
2,106,804 + BWI76_RS10005 0.38 -0.7
2,106,817 - BWI76_RS10005 0.41 +3.2
2,106,882 + BWI76_RS10005 0.57 -2.6
2,106,905 + BWI76_RS10005 0.62 -1.6
2,106,949 + BWI76_RS10005 0.73 -0.9
2,106,985 - BWI76_RS10005 0.82 -0.3
2,106,998 - BWI76_RS10005 0.85 +0.4
2,107,007 + BWI76_RS10005 0.87 -1.9
2,107,042 + +0.3
2,107,046 + -0.7
2,107,061 + -2.6
2,107,061 + -1.4
2,107,090 - +0.8
2,107,091 - +0.7
2,107,091 - -2.6
2,107,188 - +1.2
2,107,196 - +1.1
2,107,559 + -0.9
2,107,559 + +1.8
2,107,560 + +2.5
2,107,560 + -0.8
2,107,566 + -2.4
2,107,567 - -0.1
2,107,568 - -1.7
2,107,568 - +2.8
2,107,588 + -1.4
2,107,588 + +3.1
2,107,595 - -2.6
2,107,601 - -1.0
2,107,627 + +0.3
2,107,636 - -1.0
2,107,639 + -2.7
2,107,646 + -1.5
2,107,646 + +0.7
2,107,646 + -0.4
2,107,646 + -1.5
2,107,646 + -0.1
2,107,646 + +2.4
2,107,646 + -1.2
2,107,646 + +0.9
2,107,646 + -0.3
2,107,646 + +1.2
2,107,646 + +0.1
2,107,646 + +1.4
2,107,646 + -0.5
2,107,646 + -2.7
2,107,652 - +0.8
2,107,654 - -0.4
2,107,654 - -1.5
2,107,654 - -1.5
2,107,654 - +1.8
2,107,654 - +0.2
2,107,654 - +0.5
2,107,654 - -0.9
2,107,654 - +0.5
2,107,695 - -0.4
2,107,697 + +0.2
2,107,698 + +0.5
2,107,700 + -1.0
2,107,702 + +0.6
2,107,710 - -0.2
2,107,744 + +1.9
2,107,744 + -0.5
2,107,752 - -3.4
2,107,756 + +1.4
2,107,756 - -2.0
2,107,769 + +1.0
2,107,782 - -1.1
2,107,792 + -0.9
2,107,799 + -0.5
2,107,799 + -2.0
2,107,807 - -1.2
2,107,808 - -2.7
2,107,820 + -2.4
2,107,836 - +0.7
2,107,869 + +0.1
2,107,869 + -0.8
2,107,869 + +0.2
2,107,869 + -0.2
2,107,869 + -0.3
2,107,869 + -1.2
2,107,869 + -0.6
2,107,869 + +0.4
2,107,869 + -3.5
2,107,869 + -0.2
2,107,869 + -1.7
2,107,869 + +0.0
2,107,869 + +0.4
2,107,869 + +1.0
2,107,869 + +0.5
2,107,869 + +1.0
2,107,869 + -1.1
2,107,877 - -0.1
2,107,877 - -1.5
2,107,877 - -0.8
2,107,877 - -0.2
2,107,877 - -1.3
2,107,877 - -1.3
2,107,887 - -0.0
2,107,892 + -0.9
2,107,904 + +1.0
2,107,917 + +1.5
2,107,924 - -0.2
2,107,924 - -0.5
2,107,924 - +1.1
2,107,924 - +0.1
2,107,934 - -1.8
2,107,935 - -0.0
2,107,944 - +2.8
2,107,947 + +0.1
2,107,950 + -0.6
2,108,006 + -0.4
2,108,006 + -0.4
2,108,006 + +1.5
2,108,006 + +1.2
2,108,006 + +0.7

Or see this region's nucleotide sequence