Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09985

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09980 and BWI76_RS09985 overlap by 13 nucleotidesBWI76_RS09985 and BWI76_RS09990 are separated by 17 nucleotidesBWI76_RS09990 and BWI76_RS09995 are separated by 122 nucleotides BWI76_RS09980: BWI76_RS09980 - competence protein, at 2,100,618 to 2,101,241 _RS09980 BWI76_RS09985: BWI76_RS09985 - membrane protein, at 2,101,229 to 2,103,364 _RS09985 BWI76_RS09990: BWI76_RS09990 - hypothetical protein, at 2,103,382 to 2,103,828 _RS09990 BWI76_RS09995: BWI76_RS09995 - DNA helicase IV, at 2,103,951 to 2,106,005 _RS09995 Position (kb) 2101 2102 2103 2104Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2100.281 kb on + strandat 2100.302 kb on - strandat 2100.370 kb on + strandat 2100.370 kb on + strandat 2100.370 kb on - strandat 2100.375 kb on - strandat 2100.378 kb on - strandat 2100.378 kb on - strandat 2100.378 kb on - strandat 2100.378 kb on - strandat 2100.378 kb on - strandat 2100.378 kb on - strandat 2100.378 kb on - strandat 2100.385 kb on + strandat 2100.388 kb on - strandat 2100.388 kb on - strandat 2100.390 kb on + strandat 2100.398 kb on + strandat 2100.398 kb on - strandat 2100.398 kb on - strandat 2100.398 kb on - strandat 2100.398 kb on - strandat 2100.399 kb on - strandat 2100.412 kb on - strandat 2100.446 kb on + strandat 2100.446 kb on + strandat 2100.510 kb on - strandat 2100.523 kb on + strandat 2100.640 kb on + strandat 2100.640 kb on + strandat 2100.640 kb on + strandat 2100.645 kb on + strandat 2100.648 kb on - strandat 2100.650 kb on + strandat 2100.650 kb on + strandat 2100.650 kb on + strandat 2100.650 kb on + strandat 2100.650 kb on + strandat 2100.658 kb on - strandat 2100.658 kb on - strandat 2100.668 kb on - strandat 2100.669 kb on - strandat 2100.669 kb on - strandat 2100.669 kb on - strandat 2100.705 kb on + strand, within BWI76_RS09980at 2100.706 kb on + strand, within BWI76_RS09980at 2100.706 kb on + strand, within BWI76_RS09980at 2100.706 kb on + strandat 2100.711 kb on + strand, within BWI76_RS09980at 2100.714 kb on - strand, within BWI76_RS09980at 2100.714 kb on - strand, within BWI76_RS09980at 2100.714 kb on - strand, within BWI76_RS09980at 2100.714 kb on - strand, within BWI76_RS09980at 2100.714 kb on - strand, within BWI76_RS09980at 2100.720 kb on + strand, within BWI76_RS09980at 2100.730 kb on - strand, within BWI76_RS09980at 2100.772 kb on + strand, within BWI76_RS09980at 2100.784 kb on + strand, within BWI76_RS09980at 2100.791 kb on + strand, within BWI76_RS09980at 2100.791 kb on + strand, within BWI76_RS09980at 2100.791 kb on + strand, within BWI76_RS09980at 2100.791 kb on + strand, within BWI76_RS09980at 2100.794 kb on - strand, within BWI76_RS09980at 2100.794 kb on - strand, within BWI76_RS09980at 2100.799 kb on - strand, within BWI76_RS09980at 2100.799 kb on - strand, within BWI76_RS09980at 2100.799 kb on - strand, within BWI76_RS09980at 2100.838 kb on + strand, within BWI76_RS09980at 2100.900 kb on - strand, within BWI76_RS09980at 2100.921 kb on + strand, within BWI76_RS09980at 2100.927 kb on - strand, within BWI76_RS09980at 2101.005 kb on + strand, within BWI76_RS09980at 2101.005 kb on + strand, within BWI76_RS09980at 2101.005 kb on + strand, within BWI76_RS09980at 2101.005 kb on + strand, within BWI76_RS09980at 2101.005 kb on + strand, within BWI76_RS09980at 2101.005 kb on + strand, within BWI76_RS09980at 2101.005 kb on + strand, within BWI76_RS09980at 2101.005 kb on + strand, within BWI76_RS09980at 2101.013 kb on - strand, within BWI76_RS09980at 2101.013 kb on - strand, within BWI76_RS09980at 2101.038 kb on + strand, within BWI76_RS09980at 2101.039 kb on + strand, within BWI76_RS09980at 2101.039 kb on + strand, within BWI76_RS09980at 2101.039 kb on + strand, within BWI76_RS09980at 2101.039 kb on + strand, within BWI76_RS09980at 2101.039 kb on + strand, within BWI76_RS09980at 2101.047 kb on - strandat 2101.049 kb on + strand, within BWI76_RS09980at 2101.049 kb on + strand, within BWI76_RS09980at 2101.049 kb on + strand, within BWI76_RS09980at 2101.049 kb on + strand, within BWI76_RS09980at 2101.049 kb on + strand, within BWI76_RS09980at 2101.049 kb on + strand, within BWI76_RS09980at 2101.049 kb on + strand, within BWI76_RS09980at 2101.057 kb on - strand, within BWI76_RS09980at 2101.057 kb on - strand, within BWI76_RS09980at 2101.057 kb on - strand, within BWI76_RS09980at 2101.065 kb on + strand, within BWI76_RS09980at 2101.065 kb on + strand, within BWI76_RS09980at 2101.065 kb on + strand, within BWI76_RS09980at 2101.075 kb on + strand, within BWI76_RS09980at 2101.075 kb on + strand, within BWI76_RS09980at 2101.126 kb on + strand, within BWI76_RS09980at 2101.130 kb on + strand, within BWI76_RS09980at 2101.137 kb on + strand, within BWI76_RS09980at 2101.147 kb on + strand, within BWI76_RS09980at 2101.155 kb on - strand, within BWI76_RS09980at 2101.155 kb on - strand, within BWI76_RS09980at 2101.163 kb on + strand, within BWI76_RS09980at 2101.170 kb on + strand, within BWI76_RS09980at 2101.186 kb on + strandat 2101.187 kb on + strandat 2101.188 kb on + strandat 2101.194 kb on - strandat 2101.196 kb on - strandat 2101.211 kb on - strandat 2101.292 kb on - strandat 2101.320 kb on + strandat 2101.404 kb on + strandat 2101.625 kb on + strand, within BWI76_RS09985at 2101.625 kb on + strandat 2101.657 kb on - strand, within BWI76_RS09985at 2101.804 kb on - strand, within BWI76_RS09985at 2101.851 kb on + strand, within BWI76_RS09985at 2101.913 kb on + strand, within BWI76_RS09985at 2102.174 kb on + strand, within BWI76_RS09985at 2102.182 kb on - strand, within BWI76_RS09985at 2102.197 kb on - strand, within BWI76_RS09985at 2102.276 kb on - strand, within BWI76_RS09985at 2102.314 kb on - strand, within BWI76_RS09985at 2102.314 kb on - strand, within BWI76_RS09985at 2102.435 kb on - strand, within BWI76_RS09985at 2102.470 kb on + strand, within BWI76_RS09985at 2102.531 kb on - strand, within BWI76_RS09985at 2102.648 kb on - strand, within BWI76_RS09985at 2102.727 kb on - strand, within BWI76_RS09985at 2102.770 kb on - strand, within BWI76_RS09985at 2102.780 kb on - strand, within BWI76_RS09985at 2102.856 kb on + strand, within BWI76_RS09985at 2103.116 kb on - strand, within BWI76_RS09985at 2103.247 kb on + strandat 2103.452 kb on - strand, within BWI76_RS09990at 2103.530 kb on - strand, within BWI76_RS09990at 2103.679 kb on - strand, within BWI76_RS09990at 2103.684 kb on - strand, within BWI76_RS09990at 2103.684 kb on - strand, within BWI76_RS09990at 2103.686 kb on - strand, within BWI76_RS09990at 2103.710 kb on - strand, within BWI76_RS09990at 2103.723 kb on - strand, within BWI76_RS09990at 2103.724 kb on - strand, within BWI76_RS09990at 2103.738 kb on + strand, within BWI76_RS09990at 2103.803 kb on - strandat 2103.834 kb on - strandat 2103.838 kb on + strandat 2103.846 kb on - strandat 2103.859 kb on + strandat 2103.867 kb on - strandat 2104.006 kb on + strandat 2104.162 kb on + strand, within BWI76_RS09995at 2104.205 kb on - strand, within BWI76_RS09995

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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2,100,281 + +0.8
2,100,302 - +0.9
2,100,370 + -1.8
2,100,370 + -1.6
2,100,370 - +2.8
2,100,375 - -1.5
2,100,378 - -0.0
2,100,378 - -0.2
2,100,378 - +0.9
2,100,378 - +0.5
2,100,378 - +0.5
2,100,378 - -0.6
2,100,378 - +1.0
2,100,385 + -0.5
2,100,388 - +2.3
2,100,388 - -0.2
2,100,390 + -0.4
2,100,398 + +0.4
2,100,398 - +0.5
2,100,398 - -0.3
2,100,398 - -0.0
2,100,398 - +1.2
2,100,399 - +1.4
2,100,412 - +0.6
2,100,446 + -0.5
2,100,446 + +0.5
2,100,510 - -1.5
2,100,523 + -0.3
2,100,640 + +0.6
2,100,640 + -2.3
2,100,640 + +1.1
2,100,645 + -1.2
2,100,648 - +2.8
2,100,650 + +1.1
2,100,650 + +0.5
2,100,650 + +3.2
2,100,650 + +1.0
2,100,650 + +0.7
2,100,658 - -1.1
2,100,658 - +1.8
2,100,668 - -0.7
2,100,669 - +1.8
2,100,669 - -1.7
2,100,669 - +2.2
2,100,705 + BWI76_RS09980 0.14 -2.9
2,100,706 + BWI76_RS09980 0.14 +2.2
2,100,706 + BWI76_RS09980 0.14 -2.3
2,100,706 + +0.2
2,100,711 + BWI76_RS09980 0.15 -1.7
2,100,714 - BWI76_RS09980 0.15 +0.2
2,100,714 - BWI76_RS09980 0.15 +0.8
2,100,714 - BWI76_RS09980 0.15 +0.9
2,100,714 - BWI76_RS09980 0.15 -0.2
2,100,714 - BWI76_RS09980 0.15 -0.5
2,100,720 + BWI76_RS09980 0.16 -3.1
2,100,730 - BWI76_RS09980 0.18 -1.0
2,100,772 + BWI76_RS09980 0.25 -1.5
2,100,784 + BWI76_RS09980 0.27 -0.1
2,100,791 + BWI76_RS09980 0.28 -2.3
2,100,791 + BWI76_RS09980 0.28 -0.5
2,100,791 + BWI76_RS09980 0.28 +1.4
2,100,791 + BWI76_RS09980 0.28 +0.7
2,100,794 - BWI76_RS09980 0.28 -0.9
2,100,794 - BWI76_RS09980 0.28 -0.7
2,100,799 - BWI76_RS09980 0.29 -0.7
2,100,799 - BWI76_RS09980 0.29 -0.7
2,100,799 - BWI76_RS09980 0.29 -0.4
2,100,838 + BWI76_RS09980 0.35 -1.5
2,100,900 - BWI76_RS09980 0.45 +1.8
2,100,921 + BWI76_RS09980 0.49 +0.3
2,100,927 - BWI76_RS09980 0.50 +0.8
2,101,005 + BWI76_RS09980 0.62 -2.8
2,101,005 + BWI76_RS09980 0.62 +1.6
2,101,005 + BWI76_RS09980 0.62 -0.2
2,101,005 + BWI76_RS09980 0.62 +1.3
2,101,005 + BWI76_RS09980 0.62 -1.1
2,101,005 + BWI76_RS09980 0.62 +1.5
2,101,005 + BWI76_RS09980 0.62 +2.1
2,101,005 + BWI76_RS09980 0.62 -0.3
2,101,013 - BWI76_RS09980 0.63 -0.8
2,101,013 - BWI76_RS09980 0.63 -0.7
2,101,038 + BWI76_RS09980 0.67 -1.6
2,101,039 + BWI76_RS09980 0.67 +1.3
2,101,039 + BWI76_RS09980 0.67 -0.5
2,101,039 + BWI76_RS09980 0.67 +0.6
2,101,039 + BWI76_RS09980 0.67 -0.5
2,101,039 + BWI76_RS09980 0.67 -0.1
2,101,047 - +4.8
2,101,049 + BWI76_RS09980 0.69 +1.1
2,101,049 + BWI76_RS09980 0.69 +0.7
2,101,049 + BWI76_RS09980 0.69 -0.9
2,101,049 + BWI76_RS09980 0.69 -0.3
2,101,049 + BWI76_RS09980 0.69 -0.3
2,101,049 + BWI76_RS09980 0.69 +0.5
2,101,049 + BWI76_RS09980 0.69 -0.8
2,101,057 - BWI76_RS09980 0.70 +0.5
2,101,057 - BWI76_RS09980 0.70 -0.4
2,101,057 - BWI76_RS09980 0.70 +1.1
2,101,065 + BWI76_RS09980 0.72 -1.1
2,101,065 + BWI76_RS09980 0.72 +0.5
2,101,065 + BWI76_RS09980 0.72 -1.3
2,101,075 + BWI76_RS09980 0.73 +0.2
2,101,075 + BWI76_RS09980 0.73 -0.4
2,101,126 + BWI76_RS09980 0.81 -0.1
2,101,130 + BWI76_RS09980 0.82 +2.2
2,101,137 + BWI76_RS09980 0.83 -0.4
2,101,147 + BWI76_RS09980 0.85 +1.0
2,101,155 - BWI76_RS09980 0.86 -1.5
2,101,155 - BWI76_RS09980 0.86 -0.7
2,101,163 + BWI76_RS09980 0.87 -0.4
2,101,170 + BWI76_RS09980 0.88 -1.9
2,101,186 + +1.5
2,101,187 + -0.2
2,101,188 + +0.2
2,101,194 - -0.9
2,101,196 - +0.1
2,101,211 - -0.6
2,101,292 - -0.4
2,101,320 + -0.8
2,101,404 + -0.1
2,101,625 + BWI76_RS09985 0.19 -0.5
2,101,625 + +0.8
2,101,657 - BWI76_RS09985 0.20 -0.2
2,101,804 - BWI76_RS09985 0.27 +1.5
2,101,851 + BWI76_RS09985 0.29 -2.9
2,101,913 + BWI76_RS09985 0.32 -0.0
2,102,174 + BWI76_RS09985 0.44 -3.0
2,102,182 - BWI76_RS09985 0.45 -1.1
2,102,197 - BWI76_RS09985 0.45 -0.9
2,102,276 - BWI76_RS09985 0.49 +0.2
2,102,314 - BWI76_RS09985 0.51 -0.1
2,102,314 - BWI76_RS09985 0.51 +0.5
2,102,435 - BWI76_RS09985 0.56 -0.1
2,102,470 + BWI76_RS09985 0.58 -0.6
2,102,531 - BWI76_RS09985 0.61 -1.5
2,102,648 - BWI76_RS09985 0.66 -1.6
2,102,727 - BWI76_RS09985 0.70 +0.5
2,102,770 - BWI76_RS09985 0.72 -1.7
2,102,780 - BWI76_RS09985 0.73 -0.1
2,102,856 + BWI76_RS09985 0.76 +0.5
2,103,116 - BWI76_RS09985 0.88 -0.7
2,103,247 + -2.0
2,103,452 - BWI76_RS09990 0.16 +0.6
2,103,530 - BWI76_RS09990 0.33 -0.7
2,103,679 - BWI76_RS09990 0.66 -0.0
2,103,684 - BWI76_RS09990 0.68 +0.1
2,103,684 - BWI76_RS09990 0.68 +0.1
2,103,686 - BWI76_RS09990 0.68 +0.2
2,103,710 - BWI76_RS09990 0.73 -0.3
2,103,723 - BWI76_RS09990 0.76 +0.2
2,103,724 - BWI76_RS09990 0.77 +0.9
2,103,738 + BWI76_RS09990 0.80 -2.9
2,103,803 - -2.0
2,103,834 - +1.8
2,103,838 + -1.3
2,103,846 - -0.4
2,103,859 + -1.7
2,103,867 - +0.2
2,104,006 + +0.0
2,104,162 + BWI76_RS09995 0.10 +0.1
2,104,205 - BWI76_RS09995 0.12 +0.6

Or see this region's nucleotide sequence