Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07525

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07520 and BWI76_RS07525 are separated by 18 nucleotidesBWI76_RS07525 and BWI76_RS07530 are separated by 2 nucleotidesBWI76_RS07530 and BWI76_RS07535 are separated by 3 nucleotides BWI76_RS07520: BWI76_RS07520 - ABC transporter substrate-binding protein, at 1,591,167 to 1,592,831 _RS07520 BWI76_RS07525: BWI76_RS07525 - ABC transporter permease, at 1,592,850 to 1,593,803 _RS07525 BWI76_RS07530: BWI76_RS07530 - binding-protein-dependent transport system inner membrane protein, at 1,593,806 to 1,594,699 _RS07530 BWI76_RS07535: BWI76_RS07535 - dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein, at 1,594,703 to 1,595,746 _RS07535 Position (kb) 1592 1593 1594Strain fitness (log2 ratio) -3 -2 -1 0 1at 1592.148 kb on + strand, within BWI76_RS07520at 1592.194 kb on - strand, within BWI76_RS07520at 1592.396 kb on - strand, within BWI76_RS07520at 1592.458 kb on - strand, within BWI76_RS07520at 1592.573 kb on - strand, within BWI76_RS07520at 1592.935 kb on - strandat 1593.006 kb on - strand, within BWI76_RS07525at 1593.134 kb on + strand, within BWI76_RS07525at 1593.180 kb on + strand, within BWI76_RS07525at 1593.234 kb on - strand, within BWI76_RS07525at 1593.281 kb on + strand, within BWI76_RS07525at 1593.463 kb on + strand, within BWI76_RS07525at 1593.775 kb on + strandat 1593.808 kb on + strandat 1594.222 kb on + strand, within BWI76_RS07530at 1594.316 kb on - strand, within BWI76_RS07530at 1594.397 kb on + strand, within BWI76_RS07530at 1594.521 kb on - strand, within BWI76_RS07530at 1594.597 kb on + strand, within BWI76_RS07530

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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1,592,148 + BWI76_RS07520 0.59 -0.5
1,592,194 - BWI76_RS07520 0.62 +0.2
1,592,396 - BWI76_RS07520 0.74 -0.3
1,592,458 - BWI76_RS07520 0.78 -0.7
1,592,573 - BWI76_RS07520 0.84 +1.0
1,592,935 - -1.3
1,593,006 - BWI76_RS07525 0.16 -1.9
1,593,134 + BWI76_RS07525 0.30 -0.4
1,593,180 + BWI76_RS07525 0.35 +0.2
1,593,234 - BWI76_RS07525 0.40 -2.8
1,593,281 + BWI76_RS07525 0.45 +0.7
1,593,463 + BWI76_RS07525 0.64 -1.4
1,593,775 + -0.1
1,593,808 + -1.2
1,594,222 + BWI76_RS07530 0.47 +0.3
1,594,316 - BWI76_RS07530 0.57 +1.6
1,594,397 + BWI76_RS07530 0.66 -2.1
1,594,521 - BWI76_RS07530 0.80 +1.1
1,594,597 + BWI76_RS07530 0.88 +0.0

Or see this region's nucleotide sequence