Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06460

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06455 and BWI76_RS06460 overlap by 4 nucleotidesBWI76_RS06460 and BWI76_RS06465 are separated by 153 nucleotidesBWI76_RS06465 and BWI76_RS06470 are separated by 45 nucleotides BWI76_RS06455: BWI76_RS06455 - 3-oxosteroid 1-dehydrogenase, at 1,356,457 to 1,358,133 _RS06455 BWI76_RS06460: BWI76_RS06460 - shikimate dehydrogenase, at 1,358,130 to 1,358,951 _RS06460 BWI76_RS06465: BWI76_RS06465 - IclR family transcriptional regulator, at 1,359,105 to 1,359,863 _RS06465 BWI76_RS06470: BWI76_RS06470 - hypothetical protein, at 1,359,909 to 1,360,241 _RS06470 Position (kb) 1358 1359Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1357.312 kb on + strand, within BWI76_RS06455at 1357.312 kb on + strand, within BWI76_RS06455at 1357.368 kb on - strand, within BWI76_RS06455at 1357.593 kb on + strand, within BWI76_RS06455at 1357.601 kb on - strand, within BWI76_RS06455at 1357.803 kb on + strand, within BWI76_RS06455at 1357.868 kb on + strand, within BWI76_RS06455at 1358.004 kb on + strandat 1358.076 kb on - strandat 1358.107 kb on - strandat 1358.214 kb on + strand, within BWI76_RS06460at 1358.222 kb on - strand, within BWI76_RS06460at 1358.255 kb on - strand, within BWI76_RS06460at 1358.275 kb on + strand, within BWI76_RS06460at 1358.498 kb on + strand, within BWI76_RS06460at 1358.530 kb on - strand, within BWI76_RS06460at 1358.747 kb on + strand, within BWI76_RS06460at 1359.362 kb on - strand, within BWI76_RS06465at 1359.378 kb on - strand, within BWI76_RS06465at 1359.499 kb on + strand, within BWI76_RS06465

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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1,357,312 + BWI76_RS06455 0.51 -2.8
1,357,312 + BWI76_RS06455 0.51 -0.6
1,357,368 - BWI76_RS06455 0.54 -1.5
1,357,593 + BWI76_RS06455 0.68 +0.4
1,357,601 - BWI76_RS06455 0.68 -0.7
1,357,803 + BWI76_RS06455 0.80 +1.4
1,357,868 + BWI76_RS06455 0.84 -2.0
1,358,004 + -0.2
1,358,076 - -2.3
1,358,107 - -0.2
1,358,214 + BWI76_RS06460 0.10 +0.5
1,358,222 - BWI76_RS06460 0.11 +1.3
1,358,255 - BWI76_RS06460 0.15 +0.3
1,358,275 + BWI76_RS06460 0.18 -0.3
1,358,498 + BWI76_RS06460 0.45 +0.2
1,358,530 - BWI76_RS06460 0.49 +1.7
1,358,747 + BWI76_RS06460 0.75 +0.3
1,359,362 - BWI76_RS06465 0.34 +2.1
1,359,378 - BWI76_RS06465 0.36 -2.1
1,359,499 + BWI76_RS06465 0.52 -0.8

Or see this region's nucleotide sequence