Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3006

Experiment: Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%
3,791,541	+		BT3005	0.73	-1.2
3,791,592	+		BT3005	0.75	-1.7
3,791,605	+		BT3005	0.75	-0.6
3,791,606	-		BT3005	0.75	-1.2
3,791,606	-		BT3005	0.75	+0.0
3,791,606	-		BT3005	0.75	-0.3
3,791,644	-		BT3005	0.77	-3.1
3,791,700	+		BT3005	0.79	-1.4
3,791,701	-		BT3005	0.79	-0.5
3,791,705	+		BT3005	0.79	-2.2
3,791,708	-		BT3005	0.79	-1.3
3,791,723	+		BT3005	0.80	-0.6
3,791,724	-		BT3005	0.80	+1.0
3,791,790	+		BT3005	0.82	+0.0
3,791,845	+		BT3005	0.84	-0.1
3,791,846	-				-1.3
3,791,846	-		BT3005	0.84	-1.7
3,791,849	+		BT3005	0.84	-1.1
3,791,890	+		BT3005	0.85	+1.0
3,791,890	+		BT3005	0.85	-1.2
3,791,983	+		BT3005	0.89	-1.6
3,791,984	-		BT3005	0.89	-1.6
3,791,984	-		BT3005	0.89	+0.0
3,792,007	+		BT3005	0.89	-0.8
3,792,020	+		BT3005	0.90	-1.2
3,792,077	-				-0.8
3,792,077	-				-1.2
3,792,079	-				+0.0
3,792,118	+				+1.0
3,792,127	+				-1.3
3,792,284	-				-2.3
3,792,307	-				+0.0
3,792,307	-				-1.0
3,792,311	-				-1.0
3,792,320	+				-1.3
3,792,321	-				-0.4
3,792,328	-				-2.1
3,792,331	+				+0.0
3,792,331	+				-0.8
3,792,331	+				-1.2
3,792,332	-				-1.0
3,792,334	+				-0.3
3,792,373	+				+0.0
3,792,373	+				+0.4
3,792,374	-				-0.9
3,792,387	+				-1.0
3,792,388	-				-1.5
3,792,392	+				-0.6
3,792,393	-				-1.6
3,792,409	+				-0.2
3,792,415	+				-1.1
3,792,416	-				-0.7
3,792,416	-				+0.0
3,792,420	+				-1.3
3,792,421	-				+1.0
3,792,421	-				-1.1
3,792,421	-				+1.0
3,792,439	+				-0.8
3,792,478	-				+2.0
3,792,478	-				-1.3
3,792,581	+				+3.0
3,792,581	+				+1.0
3,792,582	-				-0.6
3,792,586	+				-2.0
3,792,586	+				-0.4
3,792,614	+				-1.0
3,792,736	-				-1.8
3,792,748	+		BT3006	0.10	-1.0
3,792,771	-		BT3006	0.11	-1.8
3,792,828	+		BT3006	0.13	-1.6
3,792,843	+		BT3006	0.14	+1.0
3,792,854	-		BT3006	0.14	+1.0
3,792,905	+		BT3006	0.16	+1.0
3,792,906	-		BT3006	0.16	-1.6
3,792,906	-		BT3006	0.16	+0.0
3,792,924	+		BT3006	0.16	-1.1
3,792,927	+		BT3006	0.17	-1.6
3,792,944	-		BT3006	0.17	-1.4
3,792,966	-		BT3006	0.18	-0.6
3,793,025	+		BT3006	0.20	-1.3
3,793,025	+		BT3006	0.20	-1.8
3,793,028	+		BT3006	0.20	-0.6
3,793,077	+		BT3006	0.22	-1.8
3,793,145	-		BT3006	0.24	-1.2
3,793,236	+		BT3006	0.27	+0.4
3,793,240	+		BT3006	0.27	-1.3
3,793,241	-		BT3006	0.27	+1.0
3,793,372	+		BT3006	0.32	+0.0
3,793,467	+		BT3006	0.35	-0.9
3,793,606	-		BT3006	0.40	-1.0
3,793,707	+		BT3006	0.43	-1.5
3,793,718	-		BT3006	0.44	-1.4
3,793,758	+		BT3006	0.45	-1.1
3,793,758	+		BT3006	0.45	-0.2
3,793,773	+		BT3006	0.46	+0.6
3,793,773	+		BT3006	0.46	-1.8
3,793,837	+		BT3006	0.48	-1.2
3,793,837	+		BT3006	0.48	-2.8
3,793,871	+		BT3006	0.49	+0.6
3,793,872	-		BT3006	0.49	-1.3
3,793,873	+		BT3006	0.49	-1.3
3,793,874	-		BT3006	0.49	+0.3
3,793,874	-		BT3006	0.49	-0.1
3,793,878	+		BT3006	0.49	-0.7
3,793,878	+		BT3006	0.49	-1.0
3,793,878	+		BT3006	0.49	-2.1
3,793,879	-		BT3006	0.49	-1.8
3,793,882	+		BT3006	0.49	-1.6
3,793,883	-		BT3006	0.49	+1.0
3,793,912	-		BT3006	0.50	-1.5
3,793,921	+		BT3006	0.51	-2.0
3,793,922	-		BT3006	0.51	+0.0
3,793,922	-		BT3006	0.51	-1.4
3,793,956	+		BT3006	0.52	-1.9
3,793,977	+		BT3006	0.53	-2.0
3,794,070	+		BT3006	0.56	-0.8
3,794,124	+		BT3006	0.58	-0.9
3,794,125	-		BT3006	0.58	-0.3
3,794,125	-		BT3006	0.58	-1.1
3,794,125	-		BT3006	0.58	-1.1
3,794,125	-		BT3006	0.58	-1.2
3,794,139	+		BT3006	0.58	+0.4
3,794,140	-		BT3006	0.58	-1.3
3,794,140	-		BT3006	0.58	-1.9
3,794,156	-		BT3006	0.59	-1.9
3,794,206	+		BT3006	0.61	-0.4
3,794,206	+		BT3006	0.61	+0.0
3,794,217	+		BT3006	0.61	+0.0
3,794,274	+		BT3006	0.63	-1.7
3,794,274	+		BT3006	0.63	+0.0
3,794,274	+		BT3006	0.63	+1.0
3,794,275	-		BT3006	0.63	-1.6
3,794,275	-		BT3006	0.63	-2.0
3,794,275	-		BT3006	0.63	-0.6
3,794,278	+		BT3006	0.63	-2.2
3,794,388	+		BT3006	0.67	-0.4
3,794,389	-		BT3006	0.67	+2.6
3,794,406	+		BT3006	0.67	-1.9
3,794,478	-				+0.0
3,794,579	+		BT3006	0.73	+0.0
3,794,687	+		BT3006	0.77	-2.3
3,794,696	+		BT3006	0.77	-1.2
3,794,726	+		BT3006	0.79	-0.7
3,794,737	-		BT3006	0.79	+0.0
3,794,745	-		BT3006	0.79	-1.4
3,794,778	+		BT3006	0.80	-1.0
3,794,778	+		BT3006	0.80	-1.6
3,794,838	-		BT3006	0.82	-1.4
3,794,954	-		BT3006	0.86	-0.5
3,795,025	+		BT3006	0.89	-2.0
3,795,025	+		BT3006	0.89	-1.1
3,795,025	+		BT3006	0.89	-2.3
3,795,026	-		BT3006	0.89	-1.0
3,795,026	-		BT3006	0.89	-0.7
3,795,028	-		BT3006	0.89	-0.6
3,795,052	-		BT3006	0.90	-1.3
3,795,166	+				-1.4
3,795,166	+				-0.8
3,795,167	-				-0.9
3,795,167	-				-0.9
3,795,278	-				+0.5
3,795,328	-				+1.0
3,795,328	-				-1.4
3,795,338	-				-1.3
3,795,394	-				-0.6
3,795,395	+				-0.7
3,795,395	+				-0.6
3,795,403	+				-2.3
3,795,404	-				-2.1
3,795,404	-				+0.0
3,795,405	+				-0.2
3,795,406	-				-0.7
3,795,406	-				-1.8
3,795,412	+				-1.1
3,795,433	-				-1.4
3,795,434	+				-1.3
3,795,435	-				-0.6
3,795,435	-				-1.3
3,795,442	+				+2.0
3,795,443	-				-1.5
3,795,443	-				-1.4
3,795,455	-				+1.0
3,795,456	+				-1.5
3,795,457	-				-0.6
3,795,478	+				-0.1
3,795,479	-				-2.9
3,795,479	-				-0.9
3,795,480	+				-0.3
3,795,481	-				-0.2
3,795,482	+				-1.9
3,795,500	+				-0.7
3,795,500	+				-1.3
3,795,501	-				+1.0
3,795,501	-				-1.6
3,795,501	-				-2.1
3,795,501	-				-1.3
3,795,502	+				-0.3
3,795,503	-				-2.0
3,795,521	-				-0.9
3,795,522	+				-1.0
3,795,522	+				-0.2
3,795,522	+				-0.9
3,795,524	+				-0.7
3,795,524	+				-1.3
3,795,525	-				-1.2
3,795,566	-				+1.0
3,795,582	-				-1.9
3,795,609	+				-2.6
3,795,633	+				-1.0
3,795,634	-				+0.0
3,795,682	+				-1.3
3,795,730	+		BT3007	0.14	-2.0
3,795,781	+		BT3007	0.19	-1.8
3,795,781	+		BT3007	0.19	-0.4
3,795,781	+		BT3007	0.19	+0.4
3,795,821	-		BT3007	0.24	-1.3
3,795,824	+		BT3007	0.24	-0.6
3,795,826	+		BT3007	0.24	+2.0
3,795,826	+		BT3007	0.24	+0.0
3,795,826	+		BT3007	0.24	-1.5
3,795,827	-		BT3007	0.25	-2.0
3,795,827	-		BT3007	0.25	-1.5
3,795,859	+		BT3007	0.28	-1.0
3,795,860	-		BT3007	0.28	-2.7
3,795,921	+		BT3007	0.35	-3.2
3,795,925	+		BT3007	0.36	+0.0
3,795,960	+		BT3007	0.40	-1.2
3,796,001	+		BT3007	0.44	-0.3
3,796,044	-		BT3007	0.49	-1.8
3,796,077	+		BT3007	0.53	-0.6
3,796,091	+		BT3007	0.55	-1.9
3,796,092	-		BT3007	0.55	+1.4
3,796,172	+		BT3007	0.64	+0.0
3,796,173	-		BT3007	0.64	-0.6
3,796,173	-		BT3007	0.64	-3.9
3,796,179	-		BT3007	0.65	-2.8
3,796,179	-		BT3007	0.65	+1.4
3,796,214	-		BT3007	0.69	-0.9
3,796,214	-		BT3007	0.69	+1.0
3,796,214	-		BT3007	0.69	+2.6