Experiment: BG11 with Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prkE and Synpcc7942_0601 are separated by 69 nucleotides Synpcc7942_0601 and Synpcc7942_0602 are separated by 455 nucleotides Synpcc7942_0602 and glgC are separated by 4 nucleotides
Synpcc7942_0600: prkE - serine/threonine protein kinase, at 588,528 to 590,060
prkE
Synpcc7942_0601: Synpcc7942_0601 - hypothetical protein, at 590,130 to 590,390
_0601
Synpcc7942_0602: Synpcc7942_0602 - hypothetical protein, at 590,846 to 591,454
_0602
Synpcc7942_0603: glgC - glucose-1-phosphate adenylyltransferase, at 591,459 to 592,751
glgC
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 589.849 kb on - strand, within prkE at 589.856 kb on + strand, within prkE at 589.863 kb on + strand, within prkE at 589.880 kb on - strand, within prkE at 589.915 kb on + strand at 589.962 kb on + strand at 589.962 kb on + strand at 589.977 kb on + strand at 589.985 kb on - strand at 589.993 kb on - strand at 590.001 kb on + strand at 590.008 kb on - strand at 590.011 kb on + strand at 590.021 kb on + strand at 590.048 kb on + strand at 590.056 kb on + strand at 590.058 kb on + strand at 590.068 kb on + strand at 590.068 kb on + strand at 590.071 kb on - strand at 590.076 kb on - strand at 590.076 kb on - strand at 590.081 kb on - strand at 590.101 kb on + strand at 590.147 kb on - strand at 590.153 kb on + strand at 590.161 kb on - strand, within Synpcc7942_0601 at 590.182 kb on - strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.228 kb on + strand, within Synpcc7942_0601 at 590.236 kb on + strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.236 kb on - strand, within Synpcc7942_0601 at 590.254 kb on + strand, within Synpcc7942_0601 at 590.254 kb on + strand, within Synpcc7942_0601 at 590.299 kb on - strand, within Synpcc7942_0601 at 590.371 kb on + strand at 590.402 kb on - strand at 590.402 kb on - strand at 590.446 kb on + strand at 590.562 kb on + strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.598 kb on + strand at 590.828 kb on + strand at 590.865 kb on + strand at 590.902 kb on + strand at 590.974 kb on + strand, within Synpcc7942_0602 at 591.002 kb on + strand, within Synpcc7942_0602 at 591.002 kb on - strand, within Synpcc7942_0602 at 591.004 kb on + strand, within Synpcc7942_0602 at 591.010 kb on - strand, within Synpcc7942_0602 at 591.012 kb on - strand, within Synpcc7942_0602 at 591.170 kb on + strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.303 kb on - strand, within Synpcc7942_0602 at 591.308 kb on - strand, within Synpcc7942_0602 at 591.382 kb on + strand, within Synpcc7942_0602 at 591.390 kb on - strand, within Synpcc7942_0602 at 591.464 kb on - strand at 591.648 kb on + strand, within glgC at 591.795 kb on - strand, within glgC at 591.872 kb on - strand, within glgC at 592.010 kb on - strand, within glgC at 592.383 kb on - strand, within glgC
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.0125 mg/ml remove 589,849 - prkE Synpcc7942_0600 0.86 -0.3 589,856 + prkE Synpcc7942_0600 0.87 -0.7 589,863 + prkE Synpcc7942_0600 0.87 -1.4 589,880 - prkE Synpcc7942_0600 0.88 +0.6 589,915 + -0.3 589,962 + +0.3 589,962 + -0.1 589,977 + -0.4 589,985 - +0.1 589,993 - -0.4 590,001 + -1.8 590,008 - +0.1 590,011 + -0.5 590,021 + +0.4 590,048 + -0.4 590,056 + +0.1 590,058 + -0.5 590,068 + +0.7 590,068 + -0.6 590,071 - -0.1 590,076 - -0.4 590,076 - +0.7 590,081 - -0.8 590,101 + -0.5 590,147 - -0.3 590,153 + -0.3 590,161 - Synpcc7942_0601 0.12 +0.4 590,182 - Synpcc7942_0601 0.20 -2.1 590,228 + Synpcc7942_0601 0.38 -0.3 590,228 + Synpcc7942_0601 0.38 -2.1 590,228 + Synpcc7942_0601 0.38 -0.2 590,236 + Synpcc7942_0601 0.41 -0.2 590,236 - Synpcc7942_0601 0.41 +0.4 590,236 - Synpcc7942_0601 0.41 -0.9 590,236 - Synpcc7942_0601 0.41 -0.0 590,254 + Synpcc7942_0601 0.48 +0.7 590,254 + Synpcc7942_0601 0.48 +0.5 590,299 - Synpcc7942_0601 0.65 -0.0 590,371 + -1.8 590,402 - -1.4 590,402 - +0.3 590,446 + +0.6 590,562 + +0.2 590,569 - -0.1 590,569 - +0.1 590,569 - +0.1 590,598 + -0.4 590,828 + -0.1 590,865 + -3.5 590,902 + -1.4 590,974 + Synpcc7942_0602 0.21 -2.6 591,002 + Synpcc7942_0602 0.26 -1.9 591,002 - Synpcc7942_0602 0.26 -2.7 591,004 + Synpcc7942_0602 0.26 -1.2 591,010 - Synpcc7942_0602 0.27 -3.2 591,012 - Synpcc7942_0602 0.27 -3.1 591,170 + Synpcc7942_0602 0.53 -1.7 591,281 - Synpcc7942_0602 0.71 -3.4 591,281 - Synpcc7942_0602 0.71 -2.3 591,299 - Synpcc7942_0602 0.74 -2.2 591,299 - Synpcc7942_0602 0.74 -2.5 591,303 - Synpcc7942_0602 0.75 -3.1 591,308 - Synpcc7942_0602 0.76 -2.0 591,382 + Synpcc7942_0602 0.88 -1.0 591,390 - Synpcc7942_0602 0.89 -1.7 591,464 - -1.8 591,648 + glgC Synpcc7942_0603 0.15 -2.4 591,795 - glgC Synpcc7942_0603 0.26 -2.4 591,872 - glgC Synpcc7942_0603 0.32 -2.3 592,010 - glgC Synpcc7942_0603 0.43 -1.8 592,383 - glgC Synpcc7942_0603 0.71 -2.7
Or see this region's nucleotide sequence