Experiment: BG11 with Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0451 and Synpcc7942_0452 are separated by 57 nucleotides Synpcc7942_0452 and Synpcc7942_0453 are separated by 185 nucleotides
Synpcc7942_0451: Synpcc7942_0451 - esterase, at 440,670 to 441,299
_0451
Synpcc7942_0452: Synpcc7942_0452 - hypothetical protein, at 441,357 to 441,836
_0452
Synpcc7942_0453: Synpcc7942_0453 - GAF sensor signal transduction histidine kinase, at 442,022 to 443,236
_0453
Position (kb) 441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 440.362 kb on - strand at 440.368 kb on - strand at 440.382 kb on + strand at 440.390 kb on + strand at 440.390 kb on - strand at 440.462 kb on + strand at 440.489 kb on - strand at 440.491 kb on + strand at 440.501 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.528 kb on + strand at 440.529 kb on - strand at 440.529 kb on - strand at 440.645 kb on + strand at 440.653 kb on + strand at 440.661 kb on - strand at 440.661 kb on - strand at 440.665 kb on + strand at 440.665 kb on + strand at 440.742 kb on - strand, within Synpcc7942_0451 at 440.742 kb on - strand, within Synpcc7942_0451 at 440.753 kb on + strand, within Synpcc7942_0451 at 440.759 kb on + strand, within Synpcc7942_0451 at 440.790 kb on + strand, within Synpcc7942_0451 at 440.798 kb on + strand, within Synpcc7942_0451 at 440.798 kb on - strand, within Synpcc7942_0451 at 440.798 kb on - strand, within Synpcc7942_0451 at 440.849 kb on + strand, within Synpcc7942_0451 at 440.860 kb on + strand at 440.860 kb on + strand, within Synpcc7942_0451 at 440.860 kb on + strand, within Synpcc7942_0451 at 440.864 kb on + strand, within Synpcc7942_0451 at 440.868 kb on - strand, within Synpcc7942_0451 at 440.868 kb on - strand, within Synpcc7942_0451 at 440.868 kb on - strand, within Synpcc7942_0451 at 440.878 kb on + strand, within Synpcc7942_0451 at 440.883 kb on + strand, within Synpcc7942_0451 at 440.886 kb on - strand, within Synpcc7942_0451 at 440.914 kb on - strand, within Synpcc7942_0451 at 440.964 kb on + strand, within Synpcc7942_0451 at 440.975 kb on - strand, within Synpcc7942_0451 at 441.020 kb on - strand, within Synpcc7942_0451 at 441.039 kb on - strand, within Synpcc7942_0451 at 441.049 kb on - strand, within Synpcc7942_0451 at 441.068 kb on + strand, within Synpcc7942_0451 at 441.074 kb on + strand, within Synpcc7942_0451 at 441.074 kb on + strand, within Synpcc7942_0451 at 441.082 kb on - strand, within Synpcc7942_0451 at 441.082 kb on - strand, within Synpcc7942_0451 at 441.106 kb on + strand, within Synpcc7942_0451 at 441.144 kb on + strand, within Synpcc7942_0451 at 441.194 kb on + strand, within Synpcc7942_0451 at 441.196 kb on + strand, within Synpcc7942_0451 at 441.202 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.209 kb on - strand, within Synpcc7942_0451 at 441.235 kb on + strand, within Synpcc7942_0451 at 441.272 kb on + strand at 441.280 kb on - strand at 441.440 kb on + strand, within Synpcc7942_0452 at 441.505 kb on + strand, within Synpcc7942_0452 at 441.573 kb on - strand, within Synpcc7942_0452 at 441.765 kb on + strand, within Synpcc7942_0452 at 441.860 kb on + strand at 441.915 kb on + strand at 441.924 kb on + strand at 441.924 kb on + strand at 441.936 kb on + strand at 441.937 kb on + strand at 441.967 kb on - strand at 441.991 kb on - strand at 441.992 kb on + strand at 442.004 kb on + strand at 442.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.0125 mg/ml remove 440,362 - +0.0 440,368 - -0.8 440,382 + +0.3 440,390 + +0.3 440,390 - -2.1 440,462 + -0.7 440,489 - +1.0 440,491 + +0.9 440,501 + +1.2 440,521 + +0.0 440,521 + -1.1 440,521 + +0.3 440,528 + +0.4 440,529 - -0.1 440,529 - -0.1 440,645 + -0.3 440,653 + +0.8 440,661 - -1.3 440,661 - +0.9 440,665 + -0.7 440,665 + +0.5 440,742 - Synpcc7942_0451 0.11 +1.0 440,742 - Synpcc7942_0451 0.11 -1.8 440,753 + Synpcc7942_0451 0.13 -0.2 440,759 + Synpcc7942_0451 0.14 +0.1 440,790 + Synpcc7942_0451 0.19 +0.9 440,798 + Synpcc7942_0451 0.20 +0.3 440,798 - Synpcc7942_0451 0.20 -0.5 440,798 - Synpcc7942_0451 0.20 +0.6 440,849 + Synpcc7942_0451 0.28 +0.0 440,860 + +0.5 440,860 + Synpcc7942_0451 0.30 -2.2 440,860 + Synpcc7942_0451 0.30 -0.6 440,864 + Synpcc7942_0451 0.31 -0.2 440,868 - Synpcc7942_0451 0.31 +0.4 440,868 - Synpcc7942_0451 0.31 -1.0 440,868 - Synpcc7942_0451 0.31 -0.8 440,878 + Synpcc7942_0451 0.33 -0.8 440,883 + Synpcc7942_0451 0.34 +1.4 440,886 - Synpcc7942_0451 0.34 +0.6 440,914 - Synpcc7942_0451 0.39 -2.0 440,964 + Synpcc7942_0451 0.47 +0.5 440,975 - Synpcc7942_0451 0.48 +0.7 441,020 - Synpcc7942_0451 0.56 -1.3 441,039 - Synpcc7942_0451 0.59 -0.1 441,049 - Synpcc7942_0451 0.60 -0.6 441,068 + Synpcc7942_0451 0.63 +0.4 441,074 + Synpcc7942_0451 0.64 -1.9 441,074 + Synpcc7942_0451 0.64 +0.7 441,082 - Synpcc7942_0451 0.65 +0.2 441,082 - Synpcc7942_0451 0.65 +0.7 441,106 + Synpcc7942_0451 0.69 +0.7 441,144 + Synpcc7942_0451 0.75 +0.5 441,194 + Synpcc7942_0451 0.83 -1.5 441,196 + Synpcc7942_0451 0.83 -0.9 441,202 - Synpcc7942_0451 0.84 -0.7 441,204 - Synpcc7942_0451 0.85 +0.6 441,204 - Synpcc7942_0451 0.85 -0.5 441,204 - Synpcc7942_0451 0.85 +0.1 441,209 - Synpcc7942_0451 0.86 -0.3 441,235 + Synpcc7942_0451 0.90 -1.0 441,272 + -0.1 441,280 - +0.9 441,440 + Synpcc7942_0452 0.17 -0.6 441,505 + Synpcc7942_0452 0.31 -3.0 441,573 - Synpcc7942_0452 0.45 -2.2 441,765 + Synpcc7942_0452 0.85 -2.0 441,860 + -2.0 441,915 + +0.2 441,924 + -0.4 441,924 + -0.5 441,936 + -0.6 441,937 + +1.2 441,967 - +0.2 441,991 - +0.2 441,992 + -0.8 442,004 + -1.0 442,012 - +1.4
Or see this region's nucleotide sequence