Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0379

Experiment: BG11 with Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycf63 and Synpcc7942_0379 are separated by 53 nucleotidesSynpcc7942_0379 and Synpcc7942_0380 are separated by 21 nucleotides Synpcc7942_0378: ycf63 - Protein of unknown function DUF140, at 372,532 to 373,326 ycf63 Synpcc7942_0379: Synpcc7942_0379 - hypothetical protein, at 373,380 to 373,763 _0379 Synpcc7942_0380: Synpcc7942_0380 - hypothetical protein, at 373,785 to 374,828 _0380 Position (kb) 373 374Strain fitness (log2 ratio) -2 -1 0 1 2 3at 372.385 kb on + strandat 372.393 kb on - strandat 372.395 kb on + strandat 372.395 kb on + strandat 372.409 kb on + strandat 372.409 kb on + strandat 372.409 kb on + strandat 372.484 kb on + strandat 372.489 kb on + strandat 372.492 kb on - strandat 372.497 kb on - strandat 372.511 kb on + strandat 372.516 kb on - strandat 372.520 kb on - strandat 372.534 kb on + strandat 372.544 kb on + strandat 372.544 kb on + strandat 372.552 kb on - strandat 372.552 kb on - strandat 372.552 kb on - strandat 372.562 kb on - strandat 372.642 kb on + strand, within ycf63at 372.642 kb on + strand, within ycf63at 372.676 kb on - strand, within ycf63at 372.680 kb on + strand, within ycf63at 372.687 kb on + strand, within ycf63at 372.695 kb on - strand, within ycf63at 372.707 kb on - strand, within ycf63at 372.708 kb on - strand, within ycf63at 372.717 kb on - strand, within ycf63at 372.732 kb on - strand, within ycf63at 372.796 kb on - strand, within ycf63at 372.802 kb on + strand, within ycf63at 372.876 kb on + strand, within ycf63at 372.913 kb on + strand, within ycf63at 372.919 kb on + strand, within ycf63at 372.927 kb on + strand, within ycf63at 372.931 kb on + strand, within ycf63at 372.950 kb on - strand, within ycf63at 372.971 kb on + strand, within ycf63at 372.995 kb on + strand, within ycf63at 372.995 kb on + strand, within ycf63at 373.003 kb on - strand, within ycf63at 373.003 kb on - strand, within ycf63at 373.019 kb on - strand, within ycf63at 373.119 kb on - strand, within ycf63at 373.120 kb on + strand, within ycf63at 373.125 kb on + strand, within ycf63at 373.133 kb on - strand, within ycf63at 373.179 kb on - strand, within ycf63at 373.196 kb on + strand, within ycf63at 373.203 kb on + strand, within ycf63at 373.231 kb on + strand, within ycf63at 373.231 kb on - strand, within ycf63at 373.271 kb on - strandat 373.292 kb on - strandat 373.320 kb on + strandat 373.328 kb on - strandat 373.329 kb on - strandat 373.329 kb on - strandat 373.333 kb on - strandat 373.346 kb on + strandat 373.354 kb on - strandat 373.356 kb on + strandat 373.415 kb on + strandat 373.418 kb on - strandat 373.423 kb on - strand, within Synpcc7942_0379at 373.440 kb on - strand, within Synpcc7942_0379at 373.502 kb on - strand, within Synpcc7942_0379at 373.502 kb on - strand, within Synpcc7942_0379at 373.502 kb on - strand, within Synpcc7942_0379at 373.502 kb on - strand, within Synpcc7942_0379at 373.519 kb on - strand, within Synpcc7942_0379at 373.539 kb on - strand, within Synpcc7942_0379at 373.539 kb on - strand, within Synpcc7942_0379at 373.561 kb on - strand, within Synpcc7942_0379at 373.610 kb on + strand, within Synpcc7942_0379at 373.657 kb on - strand, within Synpcc7942_0379at 373.715 kb on - strand, within Synpcc7942_0379at 373.725 kb on - strandat 373.752 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.0125 mg/ml
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372,385 + -0.3
372,393 - -0.1
372,395 + +0.1
372,395 + +0.0
372,409 + +0.2
372,409 + +0.2
372,409 + -1.9
372,484 + +0.2
372,489 + -0.2
372,492 - +0.8
372,497 - +0.3
372,511 + +0.4
372,516 - +0.9
372,520 - +1.3
372,534 + +2.3
372,544 + +0.9
372,544 + +1.0
372,552 - +0.4
372,552 - +0.4
372,552 - -0.2
372,562 - +0.1
372,642 + ycf63 Synpcc7942_0378 0.14 +2.2
372,642 + ycf63 Synpcc7942_0378 0.14 +1.8
372,676 - ycf63 Synpcc7942_0378 0.18 +1.1
372,680 + ycf63 Synpcc7942_0378 0.19 -1.2
372,687 + ycf63 Synpcc7942_0378 0.19 +0.2
372,695 - ycf63 Synpcc7942_0378 0.21 -1.3
372,707 - ycf63 Synpcc7942_0378 0.22 +0.1
372,708 - ycf63 Synpcc7942_0378 0.22 +0.7
372,717 - ycf63 Synpcc7942_0378 0.23 +1.5
372,732 - ycf63 Synpcc7942_0378 0.25 +1.7
372,796 - ycf63 Synpcc7942_0378 0.33 +1.6
372,802 + ycf63 Synpcc7942_0378 0.34 +1.5
372,876 + ycf63 Synpcc7942_0378 0.43 -0.2
372,913 + ycf63 Synpcc7942_0378 0.48 +1.0
372,919 + ycf63 Synpcc7942_0378 0.49 -0.0
372,927 + ycf63 Synpcc7942_0378 0.50 -0.3
372,931 + ycf63 Synpcc7942_0378 0.50 +0.2
372,950 - ycf63 Synpcc7942_0378 0.53 +0.6
372,971 + ycf63 Synpcc7942_0378 0.55 +0.9
372,995 + ycf63 Synpcc7942_0378 0.58 -1.6
372,995 + ycf63 Synpcc7942_0378 0.58 +1.1
373,003 - ycf63 Synpcc7942_0378 0.59 +0.6
373,003 - ycf63 Synpcc7942_0378 0.59 +2.4
373,019 - ycf63 Synpcc7942_0378 0.61 +0.4
373,119 - ycf63 Synpcc7942_0378 0.74 +1.3
373,120 + ycf63 Synpcc7942_0378 0.74 +0.8
373,125 + ycf63 Synpcc7942_0378 0.75 +0.8
373,133 - ycf63 Synpcc7942_0378 0.76 -0.7
373,179 - ycf63 Synpcc7942_0378 0.81 +1.6
373,196 + ycf63 Synpcc7942_0378 0.84 +0.2
373,203 + ycf63 Synpcc7942_0378 0.84 +1.8
373,231 + ycf63 Synpcc7942_0378 0.88 -0.1
373,231 - ycf63 Synpcc7942_0378 0.88 +1.5
373,271 - +1.7
373,292 - +1.3
373,320 + -0.1
373,328 - +0.8
373,329 - -0.1
373,329 - -1.3
373,333 - +0.8
373,346 + +0.0
373,354 - -0.5
373,356 + +1.1
373,415 + -0.4
373,418 - +0.5
373,423 - Synpcc7942_0379 0.11 -1.3
373,440 - Synpcc7942_0379 0.16 -0.5
373,502 - Synpcc7942_0379 0.32 -0.2
373,502 - Synpcc7942_0379 0.32 -0.2
373,502 - Synpcc7942_0379 0.32 -0.8
373,502 - Synpcc7942_0379 0.32 -0.1
373,519 - Synpcc7942_0379 0.36 -1.1
373,539 - Synpcc7942_0379 0.41 -0.3
373,539 - Synpcc7942_0379 0.41 +0.7
373,561 - Synpcc7942_0379 0.47 -0.1
373,610 + Synpcc7942_0379 0.60 -0.0
373,657 - Synpcc7942_0379 0.72 -0.9
373,715 - Synpcc7942_0379 0.87 +3.1
373,725 - -0.4
373,752 - -0.3

Or see this region's nucleotide sequence