Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06446

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06444 and H281DRAFT_06445 are separated by 42 nucleotidesH281DRAFT_06445 and H281DRAFT_06446 are separated by 19 nucleotidesH281DRAFT_06446 and H281DRAFT_06447 are separated by 742 nucleotides H281DRAFT_06444: H281DRAFT_06444 - cyclic pyranopterin monophosphate synthase subunit MoaA, at 50,014 to 51,117 _06444 H281DRAFT_06445: H281DRAFT_06445 - Molybdopterin synthase catalytic subunit, at 51,160 to 51,717 _06445 H281DRAFT_06446: H281DRAFT_06446 - molybdopterin synthase subunit MoaD (EC 2.8.1.12), at 51,737 to 51,994 _06446 H281DRAFT_06447: H281DRAFT_06447 - protein PsiE, at 52,737 to 53,195 _06447 Position (kb) 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strandat 50.916 kb on - strand, within H281DRAFT_06444at 50.916 kb on - strand, within H281DRAFT_06444at 50.916 kb on - strand, within H281DRAFT_06444at 50.916 kb on - strand, within H281DRAFT_06444at 50.916 kb on - strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.918 kb on - strand, within H281DRAFT_06444at 50.918 kb on - strand, within H281DRAFT_06444at 50.919 kb on + strand, within H281DRAFT_06444at 50.919 kb on + strand, within H281DRAFT_06444at 50.920 kb on - strand, within H281DRAFT_06444at 50.920 kb on - strand, within H281DRAFT_06444at 50.920 kb on - strand, within H281DRAFT_06444at 51.006 kb on + strand, within H281DRAFT_06444at 51.083 kb on - strandat 51.087 kb on + strandat 51.087 kb on + strandat 51.087 kb on + strandat 51.088 kb on - strandat 51.088 kb on - strandat 51.133 kb on + strandat 51.134 kb on - strandat 51.134 kb on - strandat 51.458 kb on + strand, within H281DRAFT_06445at 51.755 kb on + strandat 51.999 kb on + strandat 51.999 kb on + strandat 51.999 kb on + strandat 51.999 kb on + strandat 52.000 kb on - strandat 52.039 kb on + strandat 52.201 kb on - strandat 52.242 kb on - strandat 52.288 kb on - strandat 52.391 kb on + strandat 52.391 kb on + strandat 52.398 kb on + strandat 52.398 kb on + strandat 52.398 kb on + strandat 52.399 kb on - strandat 52.399 kb on - strandat 52.399 kb on - strandat 52.558 kb on + strandat 52.558 kb on + strandat 52.567 kb on + strandat 52.567 kb on + strandat 52.738 kb on + strandat 52.738 kb on + strandat 52.738 kb on + strandat 52.739 kb on - strandat 52.816 kb on - strand, within H281DRAFT_06447at 52.816 kb on - strand, within H281DRAFT_06447at 52.845 kb on + strand, within H281DRAFT_06447at 52.846 kb on - strand, within H281DRAFT_06447at 52.846 kb on - strand, within H281DRAFT_06447at 52.859 kb on + strand, within H281DRAFT_06447at 52.860 kb on - strand, within H281DRAFT_06447at 52.863 kb on - strand, within H281DRAFT_06447at 52.868 kb on + strand, within H281DRAFT_06447at 52.931 kb on + strand, within H281DRAFT_06447at 52.968 kb on + strand, within H281DRAFT_06447at 52.973 kb on - strand, within H281DRAFT_06447

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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50,915 + H281DRAFT_06444 0.82 -2.2
50,915 + H281DRAFT_06444 0.82 +2.0
50,915 + H281DRAFT_06444 0.82 +0.9
50,915 + H281DRAFT_06444 0.82 -0.1
50,915 + H281DRAFT_06444 0.82 +0.3
50,915 + H281DRAFT_06444 0.82 +1.2
50,915 + +2.2
50,916 - H281DRAFT_06444 0.82 +1.5
50,916 - H281DRAFT_06444 0.82 -0.8
50,916 - H281DRAFT_06444 0.82 -0.2
50,916 - H281DRAFT_06444 0.82 +1.4
50,916 - H281DRAFT_06444 0.82 +0.6
50,917 + H281DRAFT_06444 0.82 -3.2
50,917 + H281DRAFT_06444 0.82 -0.3
50,917 + H281DRAFT_06444 0.82 +0.1
50,917 + H281DRAFT_06444 0.82 +0.0
50,917 + H281DRAFT_06444 0.82 -0.1
50,917 + H281DRAFT_06444 0.82 -2.8
50,918 - H281DRAFT_06444 0.82 +0.0
50,918 - H281DRAFT_06444 0.82 +0.1
50,919 + H281DRAFT_06444 0.82 +0.5
50,919 + H281DRAFT_06444 0.82 +0.6
50,920 - H281DRAFT_06444 0.82 -1.4
50,920 - H281DRAFT_06444 0.82 +0.7
50,920 - H281DRAFT_06444 0.82 -0.1
51,006 + H281DRAFT_06444 0.90 -1.0
51,083 - +1.0
51,087 + -0.6
51,087 + -2.6
51,087 + +1.4
51,088 - -0.1
51,088 - +0.8
51,133 + +0.3
51,134 - +1.1
51,134 - +1.1
51,458 + H281DRAFT_06445 0.53 +0.0
51,755 + +0.3
51,999 + -0.5
51,999 + -0.1
51,999 + +0.1
51,999 + +0.5
52,000 - +0.4
52,039 + -0.1
52,201 - -1.0
52,242 - -0.2
52,288 - +0.9
52,391 + +0.8
52,391 + +1.0
52,398 + -0.3
52,398 + -0.3
52,398 + +0.1
52,399 - +0.6
52,399 - +0.6
52,399 - -0.0
52,558 + +0.4
52,558 + +0.5
52,567 + +0.5
52,567 + +0.5
52,738 + -0.7
52,738 + +0.1
52,738 + +0.4
52,739 - -0.6
52,816 - H281DRAFT_06447 0.17 +0.2
52,816 - H281DRAFT_06447 0.17 +0.0
52,845 + H281DRAFT_06447 0.24 +0.2
52,846 - H281DRAFT_06447 0.24 +0.7
52,846 - H281DRAFT_06447 0.24 +1.4
52,859 + H281DRAFT_06447 0.27 +1.1
52,860 - H281DRAFT_06447 0.27 +0.0
52,863 - H281DRAFT_06447 0.27 +0.1
52,868 + H281DRAFT_06447 0.29 -0.7
52,931 + H281DRAFT_06447 0.42 -0.1
52,968 + H281DRAFT_06447 0.50 -1.3
52,973 - H281DRAFT_06447 0.51 -0.7

Or see this region's nucleotide sequence