Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05955

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05954 and H281DRAFT_05955 are separated by 12 nucleotidesH281DRAFT_05955 and H281DRAFT_05956 overlap by 4 nucleotides H281DRAFT_05954: H281DRAFT_05954 - Sugar phosphate permease, at 94,168 to 95,490 _05954 H281DRAFT_05955: H281DRAFT_05955 - Predicted arabinose efflux permease, MFS family, at 95,503 to 96,741 _05955 H281DRAFT_05956: H281DRAFT_05956 - Predicted arabinose efflux permease, MFS family, at 96,738 to 98,018 _05956 Position (kb) 95 96 97Strain fitness (log2 ratio) -1 0 1at 94.541 kb on - strand, within H281DRAFT_05954at 94.541 kb on - strand, within H281DRAFT_05954at 94.590 kb on - strand, within H281DRAFT_05954at 94.748 kb on + strand, within H281DRAFT_05954at 95.150 kb on + strand, within H281DRAFT_05954at 95.167 kb on - strand, within H281DRAFT_05954at 95.206 kb on - strand, within H281DRAFT_05954at 95.240 kb on + strand, within H281DRAFT_05954at 95.282 kb on + strand, within H281DRAFT_05954at 95.676 kb on - strand, within H281DRAFT_05955at 95.676 kb on - strand, within H281DRAFT_05955at 96.008 kb on + strand, within H281DRAFT_05955at 96.081 kb on - strand, within H281DRAFT_05955at 96.266 kb on + strand, within H281DRAFT_05955at 96.267 kb on - strand, within H281DRAFT_05955at 96.669 kb on - strandat 97.052 kb on - strand, within H281DRAFT_05956at 97.259 kb on - strand, within H281DRAFT_05956

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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94,541 - H281DRAFT_05954 0.28 +0.1
94,541 - H281DRAFT_05954 0.28 -0.3
94,590 - H281DRAFT_05954 0.32 -0.8
94,748 + H281DRAFT_05954 0.44 +0.0
95,150 + H281DRAFT_05954 0.74 -0.6
95,167 - H281DRAFT_05954 0.76 -1.2
95,206 - H281DRAFT_05954 0.78 +0.3
95,240 + H281DRAFT_05954 0.81 -0.2
95,282 + H281DRAFT_05954 0.84 +0.7
95,676 - H281DRAFT_05955 0.14 +1.4
95,676 - H281DRAFT_05955 0.14 +0.8
96,008 + H281DRAFT_05955 0.41 -0.1
96,081 - H281DRAFT_05955 0.47 -1.5
96,266 + H281DRAFT_05955 0.62 -0.1
96,267 - H281DRAFT_05955 0.62 +1.0
96,669 - -1.6
97,052 - H281DRAFT_05956 0.25 +0.3
97,259 - H281DRAFT_05956 0.41 +1.2

Or see this region's nucleotide sequence