Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05289

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05287 and H281DRAFT_05288 are separated by 262 nucleotidesH281DRAFT_05288 and H281DRAFT_05289 are separated by 28 nucleotidesH281DRAFT_05289 and H281DRAFT_05290 are separated by 331 nucleotides H281DRAFT_05287: H281DRAFT_05287 - porin, OprB family, at 29,560 to 31,119 _05287 H281DRAFT_05288: H281DRAFT_05288 - hypothetical protein, at 31,382 to 32,065 _05288 H281DRAFT_05289: H281DRAFT_05289 - N-hydroxyarylamine O-acetyltransferase, at 32,094 to 32,930 _05289 H281DRAFT_05290: H281DRAFT_05290 - amino acid ABC transporter substrate-binding protein, PAAT family, at 33,262 to 34,122 _05290 Position (kb) 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1at 31.131 kb on + strandat 31.132 kb on - strandat 31.246 kb on + strandat 31.246 kb on + strandat 31.286 kb on + strandat 31.367 kb on + strandat 31.377 kb on + strandat 31.378 kb on - strandat 31.378 kb on - strandat 31.381 kb on + strandat 31.381 kb on + strandat 31.547 kb on + strand, within H281DRAFT_05288at 31.548 kb on - strand, within H281DRAFT_05288at 31.935 kb on - strand, within H281DRAFT_05288at 31.935 kb on - strand, within H281DRAFT_05288at 31.995 kb on + strand, within H281DRAFT_05288at 32.094 kb on - strandat 32.335 kb on + strand, within H281DRAFT_05289at 32.418 kb on - strand, within H281DRAFT_05289at 32.796 kb on - strand, within H281DRAFT_05289at 32.929 kb on - strandat 32.971 kb on - strandat 33.109 kb on - strandat 33.751 kb on - strand, within H281DRAFT_05290at 33.751 kb on - strand, within H281DRAFT_05290at 33.751 kb on - strand, within H281DRAFT_05290at 33.782 kb on - strand, within H281DRAFT_05290at 33.783 kb on + strand, within H281DRAFT_05290at 33.784 kb on - strand, within H281DRAFT_05290at 33.833 kb on - strand, within H281DRAFT_05290at 33.904 kb on + strand, within H281DRAFT_05290at 33.905 kb on - strand, within H281DRAFT_05290

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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31,131 + -0.1
31,132 - -1.6
31,246 + -0.6
31,246 + +0.6
31,286 + +0.5
31,367 + +1.4
31,377 + +0.2
31,378 - -1.5
31,378 - -0.5
31,381 + -0.3
31,381 + -0.6
31,547 + H281DRAFT_05288 0.24 -1.1
31,548 - H281DRAFT_05288 0.24 -0.4
31,935 - H281DRAFT_05288 0.81 -0.1
31,935 - H281DRAFT_05288 0.81 +0.2
31,995 + H281DRAFT_05288 0.90 -0.6
32,094 - +0.6
32,335 + H281DRAFT_05289 0.29 -0.7
32,418 - H281DRAFT_05289 0.39 +0.5
32,796 - H281DRAFT_05289 0.84 +0.0
32,929 - -0.2
32,971 - -0.6
33,109 - +0.3
33,751 - H281DRAFT_05290 0.57 +0.1
33,751 - H281DRAFT_05290 0.57 -1.7
33,751 - H281DRAFT_05290 0.57 -1.0
33,782 - H281DRAFT_05290 0.60 -3.1
33,783 + H281DRAFT_05290 0.61 -0.5
33,784 - H281DRAFT_05290 0.61 -0.5
33,833 - H281DRAFT_05290 0.66 -2.3
33,904 + H281DRAFT_05290 0.75 +0.1
33,905 - H281DRAFT_05290 0.75 -0.0

Or see this region's nucleotide sequence