Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05129

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05128 and H281DRAFT_05129 are separated by 49 nucleotidesH281DRAFT_05129 and H281DRAFT_05130 are separated by 91 nucleotides H281DRAFT_05128: H281DRAFT_05128 - Protein of unknown function (DUF1571), at 76,487 to 77,515 _05128 H281DRAFT_05129: H281DRAFT_05129 - long-chain acyl-CoA synthetase, at 77,565 to 79,397 _05129 H281DRAFT_05130: H281DRAFT_05130 - 3-ketoacyl-CoA thiolase, at 79,489 to 80,790 _05130 Position (kb) 77 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2at 76.615 kb on - strand, within H281DRAFT_05128at 76.615 kb on - strand, within H281DRAFT_05128at 76.656 kb on + strand, within H281DRAFT_05128at 76.700 kb on + strand, within H281DRAFT_05128at 76.785 kb on + strand, within H281DRAFT_05128at 76.786 kb on - strand, within H281DRAFT_05128at 76.786 kb on - strand, within H281DRAFT_05128at 76.800 kb on + strand, within H281DRAFT_05128at 76.800 kb on + strand, within H281DRAFT_05128at 77.024 kb on - strand, within H281DRAFT_05128at 77.024 kb on - strand, within H281DRAFT_05128at 77.117 kb on - strandat 77.118 kb on + strand, within H281DRAFT_05128at 77.118 kb on + strand, within H281DRAFT_05128at 77.389 kb on + strand, within H281DRAFT_05128at 77.677 kb on + strandat 77.851 kb on + strand, within H281DRAFT_05129at 77.999 kb on - strand, within H281DRAFT_05129at 77.999 kb on - strand, within H281DRAFT_05129at 78.191 kb on - strand, within H281DRAFT_05129at 78.331 kb on + strand, within H281DRAFT_05129at 78.481 kb on + strand, within H281DRAFT_05129at 78.622 kb on + strand, within H281DRAFT_05129at 78.677 kb on + strand, within H281DRAFT_05129at 78.678 kb on - strand, within H281DRAFT_05129at 78.678 kb on - strand, within H281DRAFT_05129at 78.678 kb on - strand, within H281DRAFT_05129at 79.019 kb on + strand, within H281DRAFT_05129at 79.114 kb on + strand, within H281DRAFT_05129at 79.114 kb on + strandat 79.141 kb on + strand, within H281DRAFT_05129at 79.141 kb on + strand, within H281DRAFT_05129at 79.142 kb on - strand, within H281DRAFT_05129at 79.142 kb on - strand, within H281DRAFT_05129at 79.201 kb on + strand, within H281DRAFT_05129at 79.280 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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76,615 - H281DRAFT_05128 0.12 +0.3
76,615 - H281DRAFT_05128 0.12 +0.1
76,656 + H281DRAFT_05128 0.16 -2.4
76,700 + H281DRAFT_05128 0.21 -0.6
76,785 + H281DRAFT_05128 0.29 +0.2
76,786 - H281DRAFT_05128 0.29 +0.2
76,786 - H281DRAFT_05128 0.29 +0.3
76,800 + H281DRAFT_05128 0.30 -0.5
76,800 + H281DRAFT_05128 0.30 -0.1
77,024 - H281DRAFT_05128 0.52 -0.6
77,024 - H281DRAFT_05128 0.52 +0.8
77,117 - -0.8
77,118 + H281DRAFT_05128 0.61 -0.4
77,118 + H281DRAFT_05128 0.61 -0.3
77,389 + H281DRAFT_05128 0.88 -1.7
77,677 + -0.3
77,851 + H281DRAFT_05129 0.16 +0.4
77,999 - H281DRAFT_05129 0.24 -1.6
77,999 - H281DRAFT_05129 0.24 -0.7
78,191 - H281DRAFT_05129 0.34 +0.0
78,331 + H281DRAFT_05129 0.42 -0.2
78,481 + H281DRAFT_05129 0.50 +0.0
78,622 + H281DRAFT_05129 0.58 +1.9
78,677 + H281DRAFT_05129 0.61 -1.0
78,678 - H281DRAFT_05129 0.61 -2.1
78,678 - H281DRAFT_05129 0.61 -0.8
78,678 - H281DRAFT_05129 0.61 -0.5
79,019 + H281DRAFT_05129 0.79 -1.1
79,114 + H281DRAFT_05129 0.85 -2.1
79,114 + -0.3
79,141 + H281DRAFT_05129 0.86 +0.7
79,141 + H281DRAFT_05129 0.86 +0.7
79,142 - H281DRAFT_05129 0.86 -0.6
79,142 - H281DRAFT_05129 0.86 +0.7
79,201 + H281DRAFT_05129 0.89 -2.5
79,280 + -0.6

Or see this region's nucleotide sequence