Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04681 and H281DRAFT_04682 are separated by 7 nucleotides H281DRAFT_04682 and H281DRAFT_04683 are separated by 136 nucleotides
H281DRAFT_04681: H281DRAFT_04681 - glycolate oxidase iron-sulfur subunit, at 84,411 to 85,637
_04681
H281DRAFT_04682: H281DRAFT_04682 - glycolate oxidase FAD binding subunit, at 85,645 to 86,733
_04682
H281DRAFT_04683: H281DRAFT_04683 - glycolate oxidase, at 86,870 to 88,363
_04683
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 84.869 kb on - strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 85.409 kb on + strand, within H281DRAFT_04681 at 85.410 kb on - strand, within H281DRAFT_04681 at 85.439 kb on + strand, within H281DRAFT_04681 at 85.480 kb on + strand, within H281DRAFT_04681 at 85.480 kb on + strand, within H281DRAFT_04681 at 85.480 kb on + strand, within H281DRAFT_04681 at 85.480 kb on + strand at 85.481 kb on - strand, within H281DRAFT_04681 at 85.481 kb on - strand, within H281DRAFT_04681 at 85.481 kb on - strand at 85.481 kb on - strand, within H281DRAFT_04681 at 85.481 kb on - strand, within H281DRAFT_04681 at 85.481 kb on - strand, within H281DRAFT_04681 at 85.525 kb on + strand at 85.525 kb on + strand at 85.525 kb on + strand at 85.526 kb on - strand at 85.769 kb on + strand, within H281DRAFT_04682 at 85.770 kb on - strand, within H281DRAFT_04682 at 85.885 kb on + strand, within H281DRAFT_04682 at 85.885 kb on + strand, within H281DRAFT_04682 at 86.163 kb on + strand, within H281DRAFT_04682 at 86.164 kb on - strand, within H281DRAFT_04682 at 86.372 kb on - strand, within H281DRAFT_04682 at 86.372 kb on - strand at 86.372 kb on - strand, within H281DRAFT_04682 at 86.374 kb on + strand, within H281DRAFT_04682 at 86.375 kb on - strand, within H281DRAFT_04682 at 86.375 kb on - strand, within H281DRAFT_04682 at 86.570 kb on + strand, within H281DRAFT_04682 at 86.630 kb on + strand at 86.631 kb on - strand at 86.643 kb on + strand at 86.749 kb on + strand at 86.750 kb on - strand at 86.750 kb on - strand at 86.883 kb on - strand at 87.175 kb on + strand, within H281DRAFT_04683 at 87.240 kb on + strand, within H281DRAFT_04683 at 87.240 kb on + strand, within H281DRAFT_04683 at 87.283 kb on + strand, within H281DRAFT_04683 at 87.315 kb on + strand, within H281DRAFT_04683 at 87.315 kb on + strand, within H281DRAFT_04683 at 87.315 kb on + strand, within H281DRAFT_04683 at 87.316 kb on - strand, within H281DRAFT_04683 at 87.316 kb on - strand, within H281DRAFT_04683 at 87.316 kb on - strand, within H281DRAFT_04683 at 87.318 kb on + strand, within H281DRAFT_04683 at 87.319 kb on - strand, within H281DRAFT_04683 at 87.319 kb on - strand, within H281DRAFT_04683 at 87.635 kb on + strand, within H281DRAFT_04683 at 87.636 kb on - strand, within H281DRAFT_04683
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 84,869 - H281DRAFT_04681 0.37 -0.5 84,934 + H281DRAFT_04681 0.43 +1.2 84,934 + H281DRAFT_04681 0.43 +0.0 84,934 + H281DRAFT_04681 0.43 +0.2 84,934 + H281DRAFT_04681 0.43 -1.7 84,934 + H281DRAFT_04681 0.43 +0.6 85,409 + H281DRAFT_04681 0.81 +0.2 85,410 - H281DRAFT_04681 0.81 -1.1 85,439 + H281DRAFT_04681 0.84 -0.8 85,480 + H281DRAFT_04681 0.87 +0.2 85,480 + H281DRAFT_04681 0.87 +0.1 85,480 + H281DRAFT_04681 0.87 -1.6 85,480 + -0.0 85,481 - H281DRAFT_04681 0.87 -2.2 85,481 - H281DRAFT_04681 0.87 -1.5 85,481 - -1.5 85,481 - H281DRAFT_04681 0.87 +1.8 85,481 - H281DRAFT_04681 0.87 +0.3 85,481 - H281DRAFT_04681 0.87 +0.7 85,525 + -0.2 85,525 + +0.5 85,525 + -1.4 85,526 - -2.3 85,769 + H281DRAFT_04682 0.11 -1.6 85,770 - H281DRAFT_04682 0.11 +0.6 85,885 + H281DRAFT_04682 0.22 -0.6 85,885 + H281DRAFT_04682 0.22 -0.4 86,163 + H281DRAFT_04682 0.48 -1.0 86,164 - H281DRAFT_04682 0.48 -0.6 86,372 - H281DRAFT_04682 0.67 -0.8 86,372 - +3.2 86,372 - H281DRAFT_04682 0.67 -2.5 86,374 + H281DRAFT_04682 0.67 -0.2 86,375 - H281DRAFT_04682 0.67 +0.3 86,375 - H281DRAFT_04682 0.67 -0.0 86,570 + H281DRAFT_04682 0.85 -0.2 86,630 + -0.6 86,631 - -1.0 86,643 + +0.8 86,749 + -0.3 86,750 - +0.6 86,750 - -2.1 86,883 - -0.6 87,175 + H281DRAFT_04683 0.20 -0.0 87,240 + H281DRAFT_04683 0.25 +0.5 87,240 + H281DRAFT_04683 0.25 -0.2 87,283 + H281DRAFT_04683 0.28 +0.6 87,315 + H281DRAFT_04683 0.30 +0.9 87,315 + H281DRAFT_04683 0.30 -1.9 87,315 + H281DRAFT_04683 0.30 -1.1 87,316 - H281DRAFT_04683 0.30 -0.9 87,316 - H281DRAFT_04683 0.30 -1.2 87,316 - H281DRAFT_04683 0.30 -1.1 87,318 + H281DRAFT_04683 0.30 +0.2 87,319 - H281DRAFT_04683 0.30 -0.3 87,319 - H281DRAFT_04683 0.30 -0.4 87,635 + H281DRAFT_04683 0.51 -0.1 87,636 - H281DRAFT_04683 0.51 -0.5
Or see this region's nucleotide sequence