Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02943

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02942 and H281DRAFT_02943 are separated by 25 nucleotidesH281DRAFT_02943 and H281DRAFT_02944 are separated by 96 nucleotides H281DRAFT_02942: H281DRAFT_02942 - glycerate dehydrogenase, at 554,749 to 555,693 _02942 H281DRAFT_02943: H281DRAFT_02943 - DNA-binding transcriptional regulator, LysR family, at 555,719 to 556,633 _02943 H281DRAFT_02944: H281DRAFT_02944 - aldehyde dehydrogenase (NAD+), at 556,730 to 558,169 _02944 Position (kb) 555 556 557Strain fitness (log2 ratio) -2 -1 0 1at 555.452 kb on + strand, within H281DRAFT_02942at 555.464 kb on - strand, within H281DRAFT_02942at 555.496 kb on - strand, within H281DRAFT_02942at 556.294 kb on + strand, within H281DRAFT_02943at 556.333 kb on + strand, within H281DRAFT_02943at 556.512 kb on - strand, within H281DRAFT_02943at 556.512 kb on - strand, within H281DRAFT_02943at 556.615 kb on + strandat 556.616 kb on - strandat 556.765 kb on + strandat 556.838 kb on + strandat 556.838 kb on + strandat 557.301 kb on - strand, within H281DRAFT_02944

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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555,452 + H281DRAFT_02942 0.74 -1.0
555,464 - H281DRAFT_02942 0.76 +0.9
555,496 - H281DRAFT_02942 0.79 +1.3
556,294 + H281DRAFT_02943 0.63 +0.4
556,333 + H281DRAFT_02943 0.67 -0.8
556,512 - H281DRAFT_02943 0.87 -1.9
556,512 - H281DRAFT_02943 0.87 -1.2
556,615 + -0.6
556,616 - +0.7
556,765 + -1.0
556,838 + +0.8
556,838 + -1.6
557,301 - H281DRAFT_02944 0.40 +0.2

Or see this region's nucleotide sequence