Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02558

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02557 and H281DRAFT_02558 are separated by 336 nucleotidesH281DRAFT_02558 and H281DRAFT_02559 overlap by 8 nucleotidesH281DRAFT_02559 and H281DRAFT_02560 are separated by 165 nucleotides H281DRAFT_02557: H281DRAFT_02557 - Beta-barrel assembly machine subunit BamA, at 130,426 to 132,735 _02557 H281DRAFT_02558: H281DRAFT_02558 - hypothetical protein, at 133,072 to 133,248 _02558 H281DRAFT_02559: H281DRAFT_02559 - hypothetical protein, at 133,241 to 133,630 _02559 H281DRAFT_02560: H281DRAFT_02560 - LPS-assembly protein, at 133,796 to 136,081 _02560 Position (kb) 133 134Strain fitness (log2 ratio) -1 0 1at 132.074 kb on - strand, within H281DRAFT_02557at 132.074 kb on - strand, within H281DRAFT_02557at 133.392 kb on + strand, within H281DRAFT_02559at 133.818 kb on + strandat 133.818 kb on + strandat 134.147 kb on + strand, within H281DRAFT_02560

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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132,074 - H281DRAFT_02557 0.71 +1.2
132,074 - H281DRAFT_02557 0.71 -1.1
133,392 + H281DRAFT_02559 0.39 +0.6
133,818 + +0.1
133,818 + -0.4
134,147 + H281DRAFT_02560 0.15 +0.6

Or see this region's nucleotide sequence