Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02504

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02502 and H281DRAFT_02503 overlap by 24 nucleotidesH281DRAFT_02503 and H281DRAFT_02504 are separated by 143 nucleotidesH281DRAFT_02504 and H281DRAFT_02505 are separated by 222 nucleotidesH281DRAFT_02505 and H281DRAFT_02506 are separated by 67 nucleotides H281DRAFT_02502: H281DRAFT_02502 - transcriptional regulator, LysR family, at 79,694 to 80,626 _02502 H281DRAFT_02503: H281DRAFT_02503 - Peroxiredoxin, at 80,603 to 81,325 _02503 H281DRAFT_02504: H281DRAFT_02504 - Alkylhydroperoxidase family enzyme, contains CxxC motif, at 81,469 to 82,029 _02504 H281DRAFT_02505: H281DRAFT_02505 - hypothetical protein, at 82,252 to 82,653 _02505 H281DRAFT_02506: H281DRAFT_02506 - hypothetical protein, at 82,721 to 83,320 _02506 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1at 80.719 kb on - strand, within H281DRAFT_02503at 80.770 kb on - strand, within H281DRAFT_02503at 81.210 kb on - strand, within H281DRAFT_02503at 81.210 kb on - strand, within H281DRAFT_02503at 81.545 kb on + strand, within H281DRAFT_02504at 81.546 kb on - strandat 81.665 kb on - strand, within H281DRAFT_02504at 82.011 kb on - strandat 82.492 kb on + strand, within H281DRAFT_02505at 82.558 kb on - strand, within H281DRAFT_02505at 82.745 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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80,719 - H281DRAFT_02503 0.16 -0.5
80,770 - H281DRAFT_02503 0.23 +0.1
81,210 - H281DRAFT_02503 0.84 +0.3
81,210 - H281DRAFT_02503 0.84 +0.8
81,545 + H281DRAFT_02504 0.14 -0.2
81,546 - +0.9
81,665 - H281DRAFT_02504 0.35 -2.6
82,011 - -1.0
82,492 + H281DRAFT_02505 0.60 -0.8
82,558 - H281DRAFT_02505 0.76 -1.4
82,745 - -0.7

Or see this region's nucleotide sequence