Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02247

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02246 and H281DRAFT_02247 are separated by 373 nucleotidesH281DRAFT_02247 and H281DRAFT_02248 overlap by 4 nucleotidesH281DRAFT_02248 and H281DRAFT_02249 are separated by 33 nucleotides H281DRAFT_02246: H281DRAFT_02246 - phosphoenolpyruvate carboxykinase (GTP), at 392,928 to 394,796 _02246 H281DRAFT_02247: H281DRAFT_02247 - D-3-phosphoglycerate dehydrogenase, at 395,170 to 396,183 _02247 H281DRAFT_02248: H281DRAFT_02248 - Predicted esterase of the alpha-beta hydrolase superfamily, at 396,180 to 397,043 _02248 H281DRAFT_02249: H281DRAFT_02249 - uncharacterized domain 1-containing protein, at 397,077 to 397,481 _02249 Position (kb) 395 396 397Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 394.273 kb on + strand, within H281DRAFT_02246at 394.274 kb on - strand, within H281DRAFT_02246at 394.274 kb on - strand, within H281DRAFT_02246at 394.321 kb on + strand, within H281DRAFT_02246at 394.321 kb on + strand, within H281DRAFT_02246at 394.322 kb on - strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.397 kb on - strand, within H281DRAFT_02246at 394.397 kb on - strand, within H281DRAFT_02246at 394.397 kb on - strand, within H281DRAFT_02246at 394.397 kb on - strand, within H281DRAFT_02246at 394.475 kb on + strand, within H281DRAFT_02246at 394.565 kb on - strand, within H281DRAFT_02246at 394.639 kb on + strandat 394.640 kb on - strandat 394.640 kb on - strandat 394.749 kb on + strandat 394.749 kb on + strandat 394.750 kb on - strandat 394.750 kb on - strandat 394.814 kb on + strandat 394.815 kb on - strandat 394.815 kb on - strandat 394.815 kb on - strandat 394.833 kb on - strandat 394.866 kb on + strandat 394.975 kb on + strandat 395.008 kb on + strandat 395.050 kb on - strandat 395.050 kb on - strandat 395.064 kb on - strandat 395.064 kb on - strandat 395.124 kb on + strandat 395.124 kb on + strandat 395.124 kb on + strandat 395.125 kb on - strandat 395.125 kb on - strandat 395.166 kb on + strandat 395.166 kb on + strandat 395.166 kb on + strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.262 kb on + strandat 395.433 kb on + strand, within H281DRAFT_02247at 395.434 kb on - strand, within H281DRAFT_02247at 395.536 kb on + strand, within H281DRAFT_02247at 395.536 kb on + strand, within H281DRAFT_02247at 395.536 kb on + strand, within H281DRAFT_02247at 395.537 kb on - strand, within H281DRAFT_02247at 395.537 kb on - strand, within H281DRAFT_02247at 395.537 kb on - strand, within H281DRAFT_02247at 395.544 kb on + strand, within H281DRAFT_02247at 395.759 kb on - strand, within H281DRAFT_02247at 395.983 kb on + strand, within H281DRAFT_02247at 395.984 kb on - strand, within H281DRAFT_02247at 395.984 kb on - strand, within H281DRAFT_02247at 395.984 kb on - strand, within H281DRAFT_02247at 396.011 kb on - strand, within H281DRAFT_02247at 396.011 kb on - strand, within H281DRAFT_02247at 396.058 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.077 kb on - strand, within H281DRAFT_02247at 396.077 kb on - strand, within H281DRAFT_02247at 396.085 kb on + strandat 396.085 kb on + strandat 396.086 kb on - strandat 396.181 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.251 kb on - strandat 396.251 kb on - strandat 396.251 kb on - strandat 396.280 kb on + strand, within H281DRAFT_02248at 396.281 kb on - strand, within H281DRAFT_02248at 396.322 kb on + strand, within H281DRAFT_02248at 396.322 kb on + strand, within H281DRAFT_02248at 396.323 kb on - strand, within H281DRAFT_02248at 396.374 kb on - strand, within H281DRAFT_02248at 396.396 kb on + strand, within H281DRAFT_02248at 396.396 kb on + strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.605 kb on + strand, within H281DRAFT_02248at 396.605 kb on + strand, within H281DRAFT_02248at 396.605 kb on + strand, within H281DRAFT_02248at 396.606 kb on - strand, within H281DRAFT_02248at 396.606 kb on - strand, within H281DRAFT_02248at 396.606 kb on - strand, within H281DRAFT_02248at 396.643 kb on + strand, within H281DRAFT_02248at 396.643 kb on + strand, within H281DRAFT_02248at 396.643 kb on + strand, within H281DRAFT_02248at 396.644 kb on - strand, within H281DRAFT_02248at 396.644 kb on - strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.778 kb on + strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.829 kb on + strand, within H281DRAFT_02248at 396.830 kb on - strand, within H281DRAFT_02248at 396.830 kb on - strand, within H281DRAFT_02248at 396.852 kb on + strand, within H281DRAFT_02248at 396.865 kb on + strand, within H281DRAFT_02248at 396.865 kb on + strand, within H281DRAFT_02248at 396.866 kb on - strand, within H281DRAFT_02248at 396.866 kb on - strand, within H281DRAFT_02248at 396.898 kb on + strand, within H281DRAFT_02248at 396.899 kb on - strand, within H281DRAFT_02248at 397.057 kb on - strandat 397.057 kb on - strandat 397.079 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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394,273 + H281DRAFT_02246 0.72 -0.8
394,274 - H281DRAFT_02246 0.72 +0.3
394,274 - H281DRAFT_02246 0.72 -2.9
394,321 + H281DRAFT_02246 0.75 +0.3
394,321 + H281DRAFT_02246 0.75 -1.4
394,322 - H281DRAFT_02246 0.75 +0.6
394,396 + H281DRAFT_02246 0.79 +0.4
394,396 + H281DRAFT_02246 0.79 -0.4
394,396 + H281DRAFT_02246 0.79 -1.3
394,396 + H281DRAFT_02246 0.79 +1.2
394,396 + H281DRAFT_02246 0.79 -0.8
394,396 + H281DRAFT_02246 0.79 -0.4
394,396 + H281DRAFT_02246 0.79 -2.8
394,396 + H281DRAFT_02246 0.79 -0.4
394,396 + H281DRAFT_02246 0.79 -1.3
394,396 + H281DRAFT_02246 0.79 -0.2
394,396 + H281DRAFT_02246 0.79 -1.2
394,397 - H281DRAFT_02246 0.79 -0.2
394,397 - H281DRAFT_02246 0.79 +0.2
394,397 - H281DRAFT_02246 0.79 +0.1
394,397 - H281DRAFT_02246 0.79 +0.2
394,475 + H281DRAFT_02246 0.83 -1.4
394,565 - H281DRAFT_02246 0.88 +0.2
394,639 + -0.8
394,640 - +1.2
394,640 - -0.3
394,749 + -0.5
394,749 + -1.7
394,750 - -2.9
394,750 - -0.6
394,814 + -1.1
394,815 - -0.2
394,815 - +1.2
394,815 - -0.3
394,833 - +0.2
394,866 + +0.5
394,975 + -1.7
395,008 + -0.3
395,050 - +0.1
395,050 - +0.0
395,064 - +0.6
395,064 - +1.0
395,124 + +0.3
395,124 + -2.2
395,124 + -0.0
395,125 - -0.1
395,125 - -2.5
395,166 + -0.4
395,166 + -1.9
395,166 + +0.6
395,167 - +0.5
395,167 - -1.2
395,167 - -0.1
395,167 - -0.5
395,167 - -0.9
395,167 - -0.3
395,167 - +0.0
395,262 + +0.8
395,433 + H281DRAFT_02247 0.26 -0.9
395,434 - H281DRAFT_02247 0.26 +1.4
395,536 + H281DRAFT_02247 0.36 -0.6
395,536 + H281DRAFT_02247 0.36 -1.6
395,536 + H281DRAFT_02247 0.36 +0.3
395,537 - H281DRAFT_02247 0.36 -0.8
395,537 - H281DRAFT_02247 0.36 +0.9
395,537 - H281DRAFT_02247 0.36 -0.2
395,544 + H281DRAFT_02247 0.37 +0.7
395,759 - H281DRAFT_02247 0.58 +1.1
395,983 + H281DRAFT_02247 0.80 +0.3
395,984 - H281DRAFT_02247 0.80 -1.0
395,984 - H281DRAFT_02247 0.80 +0.1
395,984 - H281DRAFT_02247 0.80 +1.2
396,011 - H281DRAFT_02247 0.83 -1.1
396,011 - H281DRAFT_02247 0.83 +0.2
396,058 + H281DRAFT_02247 0.88 -0.3
396,076 + H281DRAFT_02247 0.89 -1.3
396,076 + H281DRAFT_02247 0.89 -1.7
396,076 + H281DRAFT_02247 0.89 -0.4
396,076 + H281DRAFT_02247 0.89 -1.4
396,076 + H281DRAFT_02247 0.89 -0.2
396,076 + H281DRAFT_02247 0.89 +0.5
396,077 - H281DRAFT_02247 0.89 +3.3
396,077 - H281DRAFT_02247 0.89 -0.2
396,085 + -0.8
396,085 + -1.9
396,086 - +0.5
396,181 + +0.3
396,250 + -0.1
396,250 + +0.3
396,250 + +1.2
396,250 + +0.2
396,250 + +0.9
396,250 + -0.7
396,250 + +0.0
396,250 + -0.8
396,251 - +1.0
396,251 - -1.3
396,251 - -0.4
396,280 + H281DRAFT_02248 0.12 +0.0
396,281 - H281DRAFT_02248 0.12 +0.0
396,322 + H281DRAFT_02248 0.16 -0.4
396,322 + H281DRAFT_02248 0.16 -0.9
396,323 - H281DRAFT_02248 0.17 -0.9
396,374 - H281DRAFT_02248 0.22 +1.4
396,396 + H281DRAFT_02248 0.25 +0.6
396,396 + H281DRAFT_02248 0.25 +0.5
396,397 - H281DRAFT_02248 0.25 -0.0
396,397 - H281DRAFT_02248 0.25 -0.8
396,397 - H281DRAFT_02248 0.25 +0.1
396,397 - H281DRAFT_02248 0.25 +0.5
396,605 + H281DRAFT_02248 0.49 -1.5
396,605 + H281DRAFT_02248 0.49 -1.5
396,605 + H281DRAFT_02248 0.49 +1.9
396,606 - H281DRAFT_02248 0.49 -1.3
396,606 - H281DRAFT_02248 0.49 +0.1
396,606 - H281DRAFT_02248 0.49 +0.3
396,643 + H281DRAFT_02248 0.54 -0.4
396,643 + H281DRAFT_02248 0.54 +0.8
396,643 + H281DRAFT_02248 0.54 -0.1
396,644 - H281DRAFT_02248 0.54 -0.2
396,644 - H281DRAFT_02248 0.54 -2.4
396,754 + H281DRAFT_02248 0.66 +0.1
396,754 + H281DRAFT_02248 0.66 -0.6
396,754 + H281DRAFT_02248 0.66 -0.3
396,754 + H281DRAFT_02248 0.66 -2.2
396,755 - H281DRAFT_02248 0.67 +0.4
396,755 - H281DRAFT_02248 0.67 -0.1
396,755 - H281DRAFT_02248 0.67 +0.3
396,778 + H281DRAFT_02248 0.69 -1.8
396,779 - H281DRAFT_02248 0.69 -1.0
396,779 - H281DRAFT_02248 0.69 -0.5
396,779 - H281DRAFT_02248 0.69 -0.6
396,829 + H281DRAFT_02248 0.75 -0.1
396,830 - H281DRAFT_02248 0.75 +0.1
396,830 - H281DRAFT_02248 0.75 +1.2
396,852 + H281DRAFT_02248 0.78 -1.2
396,865 + H281DRAFT_02248 0.79 -0.1
396,865 + H281DRAFT_02248 0.79 -0.3
396,866 - H281DRAFT_02248 0.79 +0.9
396,866 - H281DRAFT_02248 0.79 -0.0
396,898 + H281DRAFT_02248 0.83 -0.3
396,899 - H281DRAFT_02248 0.83 -1.0
397,057 - -0.2
397,057 - -1.0
397,079 - -0.1
397,094 - -1.1
397,094 - +0.5
397,094 - +0.2
397,094 - +0.8

Or see this region's nucleotide sequence