Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02008 and H281DRAFT_02009 are separated by 80 nucleotides H281DRAFT_02009 and H281DRAFT_02010 are separated by 341 nucleotides H281DRAFT_02010 and H281DRAFT_02011 are separated by 165 nucleotides
H281DRAFT_02008: H281DRAFT_02008 - phosphocarrier protein, at 125,916 to 126,185
_02008
H281DRAFT_02009: H281DRAFT_02009 - PTS system, ascorbate-specific IIA component, at 126,266 to 126,754
_02009
H281DRAFT_02010: H281DRAFT_02010 - glutathione synthase, at 127,096 to 128,052
_02010
H281DRAFT_02011: H281DRAFT_02011 - glutamate--cysteine ligase, at 128,218 to 129,507
_02011
Position (kb) 127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 126.100 kb on + strand, within H281DRAFT_02008 at 126.100 kb on + strand, within H281DRAFT_02008 at 126.100 kb on + strand, within H281DRAFT_02008 at 126.100 kb on + strand, within H281DRAFT_02008 at 126.101 kb on - strand, within H281DRAFT_02008 at 126.101 kb on - strand, within H281DRAFT_02008 at 126.101 kb on - strand, within H281DRAFT_02008 at 126.101 kb on - strand, within H281DRAFT_02008 at 126.101 kb on - strand, within H281DRAFT_02008 at 126.101 kb on - strand, within H281DRAFT_02008 at 126.164 kb on + strand at 126.206 kb on + strand at 126.206 kb on + strand at 126.207 kb on - strand at 126.207 kb on - strand at 126.240 kb on + strand at 126.241 kb on - strand at 126.241 kb on - strand at 126.241 kb on - strand at 126.244 kb on + strand at 126.245 kb on - strand at 126.245 kb on - strand at 126.245 kb on - strand at 126.245 kb on - strand at 126.245 kb on - strand at 126.684 kb on + strand, within H281DRAFT_02009 at 126.956 kb on + strand at 126.957 kb on - strand at 126.957 kb on - strand at 126.990 kb on + strand at 126.990 kb on + strand at 126.990 kb on + strand at 126.991 kb on - strand at 126.991 kb on - strand at 126.991 kb on - strand at 127.012 kb on - strand at 127.057 kb on + strand at 127.057 kb on + strand at 127.058 kb on - strand at 127.058 kb on - strand at 127.058 kb on - strand at 127.058 kb on - strand at 127.058 kb on - strand at 127.532 kb on - strand, within H281DRAFT_02010 at 127.757 kb on + strand, within H281DRAFT_02010 at 127.757 kb on + strand, within H281DRAFT_02010 at 127.757 kb on + strand, within H281DRAFT_02010 at 127.757 kb on + strand, within H281DRAFT_02010 at 127.757 kb on + strand, within H281DRAFT_02010 at 127.757 kb on + strand, within H281DRAFT_02010 at 127.758 kb on - strand, within H281DRAFT_02010 at 127.758 kb on - strand, within H281DRAFT_02010 at 127.758 kb on - strand, within H281DRAFT_02010 at 127.758 kb on - strand, within H281DRAFT_02010 at 127.849 kb on - strand, within H281DRAFT_02010 at 127.949 kb on + strand, within H281DRAFT_02010 at 127.949 kb on + strand, within H281DRAFT_02010 at 127.949 kb on + strand, within H281DRAFT_02010 at 127.949 kb on + strand, within H281DRAFT_02010 at 127.949 kb on + strand, within H281DRAFT_02010 at 127.949 kb on + strand, within H281DRAFT_02010 at 127.950 kb on - strand, within H281DRAFT_02010 at 127.950 kb on - strand, within H281DRAFT_02010 at 127.956 kb on + strand, within H281DRAFT_02010 at 127.957 kb on - strand at 127.957 kb on - strand at 127.957 kb on - strand at 127.957 kb on - strand at 127.957 kb on - strand at 127.995 kb on + strand at 127.995 kb on + strand at 127.996 kb on - strand at 127.996 kb on - strand at 128.006 kb on + strand at 128.006 kb on + strand at 128.007 kb on - strand at 128.007 kb on - strand at 128.022 kb on + strand at 128.094 kb on + strand at 128.095 kb on - strand at 128.095 kb on - strand at 128.095 kb on - strand at 128.095 kb on - strand at 128.219 kb on + strand at 128.219 kb on + strand at 128.220 kb on - strand at 128.297 kb on + strand at 128.297 kb on + strand at 128.297 kb on + strand at 128.298 kb on - strand at 128.298 kb on - strand at 128.298 kb on - strand at 128.298 kb on - strand at 128.298 kb on - strand at 128.298 kb on - strand at 128.298 kb on - strand at 128.298 kb on - strand at 128.301 kb on + strand at 128.301 kb on + strand at 128.301 kb on + strand at 128.301 kb on + strand at 128.301 kb on + strand at 128.301 kb on + strand at 128.301 kb on + strand at 128.302 kb on - strand at 128.302 kb on - strand at 128.302 kb on - strand at 128.302 kb on - strand at 128.302 kb on - strand at 128.302 kb on - strand at 128.302 kb on - strand at 128.302 kb on - strand at 128.302 kb on - strand at 128.303 kb on + strand at 128.303 kb on + strand at 128.303 kb on + strand at 128.303 kb on + strand at 128.303 kb on + strand at 128.303 kb on + strand at 128.303 kb on + strand at 128.303 kb on + strand at 128.304 kb on - strand at 128.304 kb on - strand at 128.304 kb on - strand at 128.304 kb on - strand at 128.304 kb on - strand at 128.304 kb on - strand at 128.304 kb on - strand at 128.439 kb on - strand, within H281DRAFT_02011 at 128.439 kb on - strand, within H281DRAFT_02011 at 128.469 kb on + strand, within H281DRAFT_02011 at 128.469 kb on + strand, within H281DRAFT_02011 at 128.469 kb on + strand, within H281DRAFT_02011 at 128.469 kb on + strand, within H281DRAFT_02011 at 128.470 kb on - strand, within H281DRAFT_02011 at 128.470 kb on - strand, within H281DRAFT_02011 at 128.470 kb on - strand, within H281DRAFT_02011 at 128.470 kb on - strand, within H281DRAFT_02011 at 128.470 kb on - strand, within H281DRAFT_02011 at 128.471 kb on + strand, within H281DRAFT_02011 at 128.471 kb on + strand, within H281DRAFT_02011 at 128.471 kb on + strand, within H281DRAFT_02011 at 128.471 kb on + strand, within H281DRAFT_02011 at 128.472 kb on - strand, within H281DRAFT_02011 at 128.516 kb on + strand, within H281DRAFT_02011 at 128.516 kb on + strand, within H281DRAFT_02011 at 128.517 kb on - strand, within H281DRAFT_02011 at 128.517 kb on - strand, within H281DRAFT_02011 at 128.645 kb on + strand, within H281DRAFT_02011 at 128.646 kb on - strand, within H281DRAFT_02011 at 128.646 kb on - strand, within H281DRAFT_02011 at 128.646 kb on - strand, within H281DRAFT_02011 at 128.646 kb on - strand, within H281DRAFT_02011 at 128.675 kb on + strand, within H281DRAFT_02011 at 128.676 kb on - strand, within H281DRAFT_02011 at 128.676 kb on - strand, within H281DRAFT_02011 at 128.676 kb on - strand, within H281DRAFT_02011 at 128.805 kb on - strand at 128.868 kb on - strand, within H281DRAFT_02011 at 128.930 kb on + strand, within H281DRAFT_02011 at 128.931 kb on - strand, within H281DRAFT_02011 at 128.931 kb on - strand, within H281DRAFT_02011
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 126,100 + H281DRAFT_02008 0.68 +1.6 126,100 + H281DRAFT_02008 0.68 +2.8 126,100 + H281DRAFT_02008 0.68 +1.1 126,100 + H281DRAFT_02008 0.68 +1.1 126,101 - H281DRAFT_02008 0.69 +2.1 126,101 - H281DRAFT_02008 0.69 +2.6 126,101 - H281DRAFT_02008 0.69 +2.4 126,101 - H281DRAFT_02008 0.69 +2.7 126,101 - H281DRAFT_02008 0.69 +1.8 126,101 - H281DRAFT_02008 0.69 +2.4 126,164 + +1.6 126,206 + +0.7 126,206 + +0.6 126,207 - +0.1 126,207 - -0.7 126,240 + +0.1 126,241 - -0.4 126,241 - +0.2 126,241 - +0.8 126,244 + -0.4 126,245 - -0.3 126,245 - +0.6 126,245 - +0.1 126,245 - -0.9 126,245 - -1.1 126,684 + H281DRAFT_02009 0.85 -1.0 126,956 + -0.5 126,957 - +0.2 126,957 - +0.2 126,990 + +1.0 126,990 + +0.1 126,990 + +0.4 126,991 - +0.4 126,991 - +0.2 126,991 - +0.2 127,012 - -1.0 127,057 + -2.5 127,057 + +0.7 127,058 - +0.0 127,058 - +0.7 127,058 - -0.4 127,058 - +1.1 127,058 - -0.9 127,532 - H281DRAFT_02010 0.46 -1.1 127,757 + H281DRAFT_02010 0.69 -0.4 127,757 + H281DRAFT_02010 0.69 -0.4 127,757 + H281DRAFT_02010 0.69 +0.3 127,757 + H281DRAFT_02010 0.69 +0.1 127,757 + H281DRAFT_02010 0.69 -0.3 127,757 + H281DRAFT_02010 0.69 -0.1 127,758 - H281DRAFT_02010 0.69 -2.0 127,758 - H281DRAFT_02010 0.69 -1.2 127,758 - H281DRAFT_02010 0.69 +0.1 127,758 - H281DRAFT_02010 0.69 -1.0 127,849 - H281DRAFT_02010 0.79 -0.5 127,949 + H281DRAFT_02010 0.89 +0.9 127,949 + H281DRAFT_02010 0.89 +0.0 127,949 + H281DRAFT_02010 0.89 +0.2 127,949 + H281DRAFT_02010 0.89 -0.5 127,949 + H281DRAFT_02010 0.89 +0.1 127,949 + H281DRAFT_02010 0.89 +0.7 127,950 - H281DRAFT_02010 0.89 -1.3 127,950 - H281DRAFT_02010 0.89 -0.2 127,956 + H281DRAFT_02010 0.90 -1.8 127,957 - +1.4 127,957 - -0.5 127,957 - +0.3 127,957 - +0.2 127,957 - -1.8 127,995 + -0.6 127,995 + -1.7 127,996 - -0.8 127,996 - +0.0 128,006 + +1.5 128,006 + -0.8 128,007 - -2.8 128,007 - +0.2 128,022 + +0.3 128,094 + -0.6 128,095 - -0.2 128,095 - -0.2 128,095 - +0.2 128,095 - -1.4 128,219 + +0.4 128,219 + +0.8 128,220 - -0.3 128,297 + -0.1 128,297 + +0.2 128,297 + +0.1 128,298 - -0.2 128,298 - +1.4 128,298 - -1.4 128,298 - -0.3 128,298 - -0.6 128,298 - +0.2 128,298 - +0.6 128,298 - +0.0 128,301 + -0.8 128,301 + +1.1 128,301 + +0.0 128,301 + +1.7 128,301 + +0.6 128,301 + -0.4 128,301 + -1.1 128,302 - +0.0 128,302 - -0.5 128,302 - +0.2 128,302 - -2.5 128,302 - -0.9 128,302 - +1.0 128,302 - -1.6 128,302 - -0.7 128,302 - -0.8 128,303 + -1.9 128,303 + +1.1 128,303 + +0.5 128,303 + -2.3 128,303 + +0.5 128,303 + -0.4 128,303 + -0.1 128,303 + -1.5 128,304 - -0.6 128,304 - -0.1 128,304 - +0.7 128,304 - +0.5 128,304 - -0.1 128,304 - -0.4 128,304 - +1.1 128,439 - H281DRAFT_02011 0.17 -0.5 128,439 - H281DRAFT_02011 0.17 +0.9 128,469 + H281DRAFT_02011 0.19 -0.7 128,469 + H281DRAFT_02011 0.19 -0.8 128,469 + H281DRAFT_02011 0.19 +0.2 128,469 + H281DRAFT_02011 0.19 -1.1 128,470 - H281DRAFT_02011 0.20 -1.0 128,470 - H281DRAFT_02011 0.20 +0.1 128,470 - H281DRAFT_02011 0.20 +0.2 128,470 - H281DRAFT_02011 0.20 -0.6 128,470 - H281DRAFT_02011 0.20 -0.3 128,471 + H281DRAFT_02011 0.20 -0.5 128,471 + H281DRAFT_02011 0.20 -1.9 128,471 + H281DRAFT_02011 0.20 +2.4 128,471 + H281DRAFT_02011 0.20 -0.8 128,472 - H281DRAFT_02011 0.20 +0.7 128,516 + H281DRAFT_02011 0.23 +1.1 128,516 + H281DRAFT_02011 0.23 -1.0 128,517 - H281DRAFT_02011 0.23 +0.3 128,517 - H281DRAFT_02011 0.23 -1.2 128,645 + H281DRAFT_02011 0.33 +0.7 128,646 - H281DRAFT_02011 0.33 +1.6 128,646 - H281DRAFT_02011 0.33 +0.2 128,646 - H281DRAFT_02011 0.33 -0.1 128,646 - H281DRAFT_02011 0.33 -0.9 128,675 + H281DRAFT_02011 0.35 -0.6 128,676 - H281DRAFT_02011 0.36 +1.1 128,676 - H281DRAFT_02011 0.36 -0.2 128,676 - H281DRAFT_02011 0.36 +0.9 128,805 - +0.1 128,868 - H281DRAFT_02011 0.50 +0.3 128,930 + H281DRAFT_02011 0.55 -1.4 128,931 - H281DRAFT_02011 0.55 +1.3 128,931 - H281DRAFT_02011 0.55 -0.5
Or see this region's nucleotide sequence