Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01867 and H281DRAFT_01868 are separated by 67 nucleotides H281DRAFT_01868 and H281DRAFT_01869 are separated by 386 nucleotides
H281DRAFT_01867: H281DRAFT_01867 - NADPH2:quinone reductase, at 779,772 to 780,752
_01867
H281DRAFT_01868: H281DRAFT_01868 - Predicted arabinose efflux permease, MFS family, at 780,820 to 782,142
_01868
H281DRAFT_01869: H281DRAFT_01869 - AraC-type DNA-binding protein, at 782,529 to 783,530
_01869
Position (kb) 780
781
782
783 Strain fitness (log2 ratio) -1
0
1
2 at 779.877 kb on - strand, within H281DRAFT_01867 at 779.901 kb on + strand, within H281DRAFT_01867 at 779.945 kb on - strand, within H281DRAFT_01867 at 780.180 kb on - strand, within H281DRAFT_01867 at 780.462 kb on - strand, within H281DRAFT_01867 at 780.700 kb on + strand at 780.746 kb on + strand at 780.746 kb on + strand at 781.048 kb on - strand, within H281DRAFT_01868 at 781.321 kb on - strand, within H281DRAFT_01868 at 781.717 kb on + strand, within H281DRAFT_01868 at 781.825 kb on + strand, within H281DRAFT_01868 at 782.028 kb on - strand at 782.125 kb on + strand at 782.182 kb on - strand at 782.483 kb on + strand at 782.484 kb on - strand at 782.484 kb on - strand at 782.627 kb on - strand at 782.832 kb on + strand, within H281DRAFT_01869 at 783.133 kb on - strand, within H281DRAFT_01869
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 779,877 - H281DRAFT_01867 0.11 -0.7 779,901 + H281DRAFT_01867 0.13 -1.2 779,945 - H281DRAFT_01867 0.18 -1.2 780,180 - H281DRAFT_01867 0.42 +0.7 780,462 - H281DRAFT_01867 0.70 +1.0 780,700 + +0.3 780,746 + +0.0 780,746 + +1.8 781,048 - H281DRAFT_01868 0.17 +0.2 781,321 - H281DRAFT_01868 0.38 -0.9 781,717 + H281DRAFT_01868 0.68 -1.1 781,825 + H281DRAFT_01868 0.76 +0.0 782,028 - -0.5 782,125 + -0.0 782,182 - +0.3 782,483 + +1.0 782,484 - -0.9 782,484 - -0.1 782,627 - -1.2 782,832 + H281DRAFT_01869 0.30 -0.8 783,133 - H281DRAFT_01869 0.60 -0.3
Or see this region's nucleotide sequence