Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01192

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01190 and H281DRAFT_01191 overlap by 4 nucleotidesH281DRAFT_01191 and H281DRAFT_01192 overlap by 8 nucleotidesH281DRAFT_01192 and H281DRAFT_01193 overlap by 19 nucleotides H281DRAFT_01190: H281DRAFT_01190 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 26,710 to 27,978 _01190 H281DRAFT_01191: H281DRAFT_01191 - Uncharacterized anaerobic dehydrogenase, at 27,975 to 28,241 _01191 H281DRAFT_01192: H281DRAFT_01192 - Glycine/D-amino acid oxidase (deaminating), at 28,234 to 29,415 _01192 H281DRAFT_01193: H281DRAFT_01193 - 4-hydroxyproline epimerase, at 29,397 to 30,368 _01193 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1at 27.711 kb on + strand, within H281DRAFT_01190at 27.711 kb on + strand, within H281DRAFT_01190at 27.880 kb on - strandat 28.949 kb on + strand, within H281DRAFT_01192at 30.042 kb on + strand, within H281DRAFT_01193at 30.043 kb on - strand, within H281DRAFT_01193at 30.161 kb on + strand, within H281DRAFT_01193at 30.380 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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27,711 + H281DRAFT_01190 0.79 -1.1
27,711 + H281DRAFT_01190 0.79 +0.3
27,880 - +1.3
28,949 + H281DRAFT_01192 0.60 -3.6
30,042 + H281DRAFT_01193 0.66 +0.4
30,043 - H281DRAFT_01193 0.66 +1.0
30,161 + H281DRAFT_01193 0.79 -2.2
30,380 + -1.3

Or see this region's nucleotide sequence