Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03750

Experiment: PYE 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep1 58 days
3,918,812	+				+0.2
3,918,820	-				+0.5
3,918,825	+				-0.2
3,918,833	-				+0.5
3,918,853	+				+0.1
3,918,853	+				+0.4
3,918,861	-				-0.8
3,918,869	-				-1.0
3,918,873	+				-0.5
3,918,894	+				-1.2
3,918,894	+				-1.0
3,918,902	-				-2.3
3,918,902	-				-1.1
3,918,921	+				+0.3
3,918,929	-		CCNA_03749	0.11	-2.8
3,918,931	-		CCNA_03749	0.11	-0.2
3,918,947	-		CCNA_03749	0.13	-1.1
3,918,975	+		CCNA_03749	0.16	-0.4
3,919,038	+		CCNA_03749	0.23	+0.3
3,919,146	+		CCNA_03749	0.35	-1.0
3,919,168	-		CCNA_03749	0.37	-2.5
3,919,175	+		CCNA_03749	0.38	+0.8
3,919,175	+		CCNA_03749	0.38	-0.9
3,919,175	+		CCNA_03749	0.38	+0.2
3,919,175	+		CCNA_03749	0.38	-1.8
3,919,175	+		CCNA_03749	0.38	-1.1
3,919,175	+		CCNA_03749	0.38	+0.3
3,919,178	-		CCNA_03749	0.38	-0.3
3,919,182	+		CCNA_03749	0.39	+1.0
3,919,183	-		CCNA_03749	0.39	-0.4
3,919,183	-		CCNA_03749	0.39	-2.1
3,919,183	-		CCNA_03749	0.39	+1.9
3,919,199	-		CCNA_03749	0.41	-1.2
3,919,199	-		CCNA_03749	0.41	-0.8
3,919,230	+		CCNA_03749	0.44	+1.3
3,919,230	+		CCNA_03749	0.44	-0.2
3,919,230	+		CCNA_03749	0.44	+0.9
3,919,230	+		CCNA_03749	0.44	+0.4
3,919,230	+		CCNA_03749	0.44	+0.1
3,919,238	-		CCNA_03749	0.45	-3.5
3,919,251	+		CCNA_03749	0.46	+0.5
3,919,277	+		CCNA_03749	0.49	+1.3
3,919,277	+		CCNA_03749	0.49	+0.2
3,919,277	+		CCNA_03749	0.49	+0.3
3,919,279	-		CCNA_03749	0.49	-0.2
3,919,285	-		CCNA_03749	0.50	+3.0
3,919,285	-		CCNA_03749	0.50	-1.1
3,919,316	+		CCNA_03749	0.53	-1.3
3,919,354	-		CCNA_03749	0.58	-1.7
3,919,374	-		CCNA_03749	0.60	-0.2
3,919,374	-		CCNA_03749	0.60	-0.8
3,919,376	+		CCNA_03749	0.60	-0.9
3,919,376	-		CCNA_03749	0.60	-1.8
3,919,384	-		CCNA_03749	0.61	-1.8
3,919,410	-		CCNA_03749	0.64	+1.9
3,919,410	-		CCNA_03749	0.64	-2.0
3,919,413	+		CCNA_03749	0.64	-1.4
3,919,431	-		CCNA_03749	0.66	-1.1
3,919,431	-		CCNA_03749	0.66	-1.4
3,919,446	-		CCNA_03749	0.68	-0.5
3,919,450	+		CCNA_03749	0.68	-1.7
3,919,450	+		CCNA_03749	0.68	+0.8
3,919,450	+		CCNA_03749	0.68	+1.9
3,919,458	-		CCNA_03749	0.69	+1.3
3,919,458	-		CCNA_03749	0.69	+1.8
3,919,458	-		CCNA_03749	0.69	-0.8
3,919,486	+		CCNA_03749	0.72	-0.5
3,919,505	-		CCNA_03749	0.74	-1.7
3,919,518	+		CCNA_03749	0.76	+0.5
3,919,531	+		CCNA_03749	0.77	+0.4
3,919,539	-		CCNA_03749	0.78	-1.5
3,919,539	-		CCNA_03749	0.78	-0.6
3,919,539	-		CCNA_03749	0.78	+0.4
3,919,581	+		CCNA_03749	0.83	-1.3
3,919,610	+		CCNA_03749	0.86	+0.1
3,919,644	+		CCNA_03749	0.90	+0.3
3,919,644	+		CCNA_03749	0.90	-0.5
3,919,647	-				-1.0
3,919,659	-				+0.4
3,919,679	-				+0.3
3,919,679	-				-0.2
3,919,679	-				-2.6
3,919,701	-				+0.9
3,919,832	+				+1.0
3,919,835	-				-1.8
3,919,840	-				-1.4
3,919,853	+				+0.2
3,919,887	+				-0.1
3,919,888	+				+0.4
3,919,888	+				-1.7
3,919,888	+				+0.7
3,919,888	+				+1.5
3,919,896	-				+0.5
3,919,896	-				-0.5
3,919,896	-				-2.4
3,919,906	-				-0.7
3,919,948	+		CCNA_03750	0.11	-1.3
3,919,956	-		CCNA_03750	0.12	+0.7
3,919,966	-		CCNA_03750	0.13	-0.9
3,919,988	+		CCNA_03750	0.15	-0.7
3,920,017	+		CCNA_03750	0.17	-0.7
3,920,056	+		CCNA_03750	0.20	+0.0
3,920,056	+		CCNA_03750	0.20	+0.6
3,920,064	-		CCNA_03750	0.21	-1.3
3,920,107	+		CCNA_03750	0.25	-0.3
3,920,107	+		CCNA_03750	0.25	+0.1
3,920,113	+		CCNA_03750	0.25	+0.0
3,920,115	-		CCNA_03750	0.25	-2.4
3,920,115	-		CCNA_03750	0.25	-1.7
3,920,115	-				+0.9
3,920,138	-		CCNA_03750	0.27	-3.6
3,920,139	-		CCNA_03750	0.27	-2.8
3,920,140	-		CCNA_03750	0.27	-1.3
3,920,148	+		CCNA_03750	0.28	+1.0
3,920,167	+		CCNA_03750	0.30	-0.2
3,920,167	-		CCNA_03750	0.30	-0.9
3,920,205	+		CCNA_03750	0.33	-0.1
3,920,225	-		CCNA_03750	0.34	+1.0
3,920,228	+		CCNA_03750	0.35	+0.5
3,920,230	-		CCNA_03750	0.35	-0.1
3,920,235	-		CCNA_03750	0.35	-1.4
3,920,236	-		CCNA_03750	0.35	-0.1
3,920,278	+		CCNA_03750	0.39	+0.9
3,920,286	-		CCNA_03750	0.39	-2.9
3,920,286	-		CCNA_03750	0.39	-0.1
3,920,346	-		CCNA_03750	0.44	-0.3
3,920,351	+		CCNA_03750	0.45	-2.0
3,920,377	+		CCNA_03750	0.47	+1.4
3,920,412	+		CCNA_03750	0.50	+0.5
3,920,442	-		CCNA_03750	0.52	-1.1
3,920,477	+		CCNA_03750	0.55	-0.3
3,920,477	+		CCNA_03750	0.55	-0.2
3,920,477	+		CCNA_03750	0.55	+0.1
3,920,485	-		CCNA_03750	0.56	-1.5
3,920,527	-		CCNA_03750	0.60	-0.8
3,920,527	-		CCNA_03750	0.60	-1.0
3,920,532	-		CCNA_03750	0.60	-1.1
3,920,554	-		CCNA_03750	0.62	-0.6
3,920,583	-		CCNA_03750	0.64	-0.1
3,920,583	-		CCNA_03750	0.64	-2.0
3,920,588	-		CCNA_03750	0.65	-1.6
3,920,602	+		CCNA_03750	0.66	-1.7
3,920,602	+		CCNA_03750	0.66	-1.3
3,920,612	+		CCNA_03750	0.67	-0.0
3,920,620	+		CCNA_03750	0.67	+0.2
3,920,620	+		CCNA_03750	0.67	+0.3
3,920,645	+		CCNA_03750	0.69	-1.0
3,920,647	-		CCNA_03750	0.69	-2.3
3,920,665	+		CCNA_03750	0.71	+0.7
3,920,665	+		CCNA_03750	0.71	+0.6
3,920,668	-		CCNA_03750	0.71	+0.7
3,920,668	-		CCNA_03750	0.71	-2.4
3,920,668	-		CCNA_03750	0.71	-1.6
3,920,670	+		CCNA_03750	0.71	+0.5
3,920,673	-		CCNA_03750	0.72	-1.1
3,920,678	-		CCNA_03750	0.72	-1.9
3,920,680	+		CCNA_03750	0.72	+0.1
3,920,680	-		CCNA_03750	0.72	+0.1
3,920,700	+		CCNA_03750	0.74	+0.0
3,920,747	+		CCNA_03750	0.78	+0.4
3,920,747	+		CCNA_03750	0.78	+0.7
3,920,755	-		CCNA_03750	0.78	-1.5
3,920,777	+		CCNA_03750	0.80	+1.9
3,920,821	+		CCNA_03750	0.84	-1.1
3,920,821	+		CCNA_03750	0.84	+0.3
3,920,829	-		CCNA_03750	0.85	-2.3
3,920,875	-		CCNA_03750	0.88	+0.9
3,920,891	+		CCNA_03750	0.90	-0.6
3,920,891	+		CCNA_03750	0.90	-0.7
3,920,899	-				-1.1
3,920,905	+				+0.6
3,920,918	+				+0.6
3,920,958	+				-1.2
3,920,958	+				+0.5
3,920,958	+				-1.3
3,920,958	+				+0.5
3,920,966	-				-0.9
3,920,966	-				+0.1
3,920,974	-				+0.2
3,920,976	-				+0.9
3,920,988	-				+0.4
3,921,015	-				+1.5
3,921,021	-				+1.2
3,921,060	+				+1.2
3,921,060	+				-1.6
3,921,075	-				+0.1
3,921,082	-				+0.3
3,921,123	+		CCNA_03751	0.15	-1.5
3,921,130	+				-1.7
3,921,130	+		CCNA_03751	0.17	-0.8
3,921,130	+		CCNA_03751	0.17	-1.7
3,921,130	+		CCNA_03751	0.17	-0.1
3,921,135	+		CCNA_03751	0.18	+1.1
3,921,138	-		CCNA_03751	0.18	+1.7
3,921,143	-		CCNA_03751	0.19	+1.1
3,921,145	+		CCNA_03751	0.19	+0.5
3,921,150	+		CCNA_03751	0.20	+0.1
3,921,150	+		CCNA_03751	0.20	+0.1
3,921,150	+		CCNA_03751	0.20	-3.5
3,921,153	-		CCNA_03751	0.21	-0.3
3,921,153	-		CCNA_03751	0.21	-1.3
3,921,153	-		CCNA_03751	0.21	-0.7
3,921,158	-		CCNA_03751	0.22	-1.0
3,921,158	-		CCNA_03751	0.22	-1.7
3,921,182	-		CCNA_03751	0.27	-1.3
3,921,184	+		CCNA_03751	0.27	-1.3
3,921,191	+		CCNA_03751	0.28	-0.0
3,921,191	+		CCNA_03751	0.28	+0.7
3,921,192	-		CCNA_03751	0.29	-0.6
3,921,209	-		CCNA_03751	0.32	+0.6
3,921,216	-		CCNA_03751	0.33	-0.9
3,921,276	+		CCNA_03751	0.45	+0.1
3,921,284	-		CCNA_03751	0.47	-0.3
3,921,284	-		CCNA_03751	0.47	+0.0
3,921,297	-		CCNA_03751	0.49	-0.0
3,921,316	+		CCNA_03751	0.53	-1.2
3,921,324	-		CCNA_03751	0.54	-3.1
3,921,324	-		CCNA_03751	0.54	-0.3
3,921,324	-		CCNA_03751	0.54	+0.3
3,921,324	-		CCNA_03751	0.54	-0.5
3,921,331	+		CCNA_03751	0.56	+1.4
3,921,344	-		CCNA_03751	0.58	-0.9
3,921,349	-		CCNA_03751	0.59	+0.2
3,921,354	+		CCNA_03751	0.60	-1.6
3,921,362	-		CCNA_03751	0.62	+0.3
3,921,373	+		CCNA_03751	0.64	+1.9
3,921,373	+		CCNA_03751	0.64	+1.0
3,921,373	+		CCNA_03751	0.64	+1.0
3,921,373	+		CCNA_03751	0.64	-1.8
3,921,373	+		CCNA_03751	0.64	-1.5
3,921,373	+		CCNA_03751	0.64	+1.6
3,921,373	+		CCNA_03751	0.64	-2.0
3,921,378	+		CCNA_03751	0.65	-0.1
3,921,381	-		CCNA_03751	0.65	-0.4
3,921,381	-		CCNA_03751	0.65	+1.1
3,921,381	-		CCNA_03751	0.65	+0.3
3,921,381	-		CCNA_03751	0.65	-0.1
3,921,381	-		CCNA_03751	0.65	-0.1
3,921,381	-		CCNA_03751	0.65	-2.5
3,921,381	-		CCNA_03751	0.65	-0.8
3,921,381	-		CCNA_03751	0.65	+0.9
3,921,386	-		CCNA_03751	0.66	-2.2
3,921,387	+				+1.9
3,921,396	-		CCNA_03751	0.68	-1.2
3,921,406	-		CCNA_03751	0.70	-1.3
3,921,406	-		CCNA_03751	0.70	-0.7
3,921,406	-		CCNA_03751	0.70	+0.7
3,921,431	-		CCNA_03751	0.75	+1.4
3,921,584	+				-1.8
3,921,584	+				-0.1
3,921,584	+				+0.3
3,921,592	-				+0.2
3,921,592	-				+1.4
3,921,614	+				-1.1
3,921,615	+				-1.0
3,921,615	+				-1.3
3,921,622	-				+1.3
3,921,623	-				-0.5
3,921,639	+				-1.5
3,921,695	+				+1.0