Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03271

Experiment: PYE 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep1 58 days
3,438,389	-				-1.5
3,438,393	+				-1.4
3,438,401	-				+1.0
3,438,401	-				-1.2
3,438,415	-				+0.1
3,438,442	-				-3.1
3,438,451	+				+1.0
3,438,451	+				-1.4
3,438,451	+				+0.4
3,438,461	+				+0.2
3,438,464	-				-0.6
3,438,464	-				-2.3
3,438,515	+		CCNA_03269	0.12	-1.2
3,438,531	+		CCNA_03269	0.14	-1.3
3,438,549	+		CCNA_03269	0.16	-0.5
3,438,632	+		CCNA_03269	0.24	+0.6
3,438,632	+		CCNA_03269	0.24	-1.2
3,438,640	-		CCNA_03269	0.25	+2.5
3,438,642	+		CCNA_03269	0.25	-0.2
3,438,642	+		CCNA_03269	0.25	+0.6
3,438,646	-		CCNA_03269	0.25	-0.1
3,438,650	-		CCNA_03269	0.26	+0.2
3,438,664	+		CCNA_03269	0.27	-1.1
3,438,664	+		CCNA_03269	0.27	-0.7
3,438,664	+		CCNA_03269	0.27	-2.1
3,438,664	+		CCNA_03269	0.27	-0.3
3,438,664	+		CCNA_03269	0.27	+3.1
3,438,664	+		CCNA_03269	0.27	-0.3
3,438,672	-		CCNA_03269	0.28	-0.5
3,438,672	-		CCNA_03269	0.28	-0.3
3,438,672	-		CCNA_03269	0.28	-2.8
3,438,672	-		CCNA_03269	0.28	-1.5
3,438,672	-		CCNA_03269	0.28	-0.6
3,438,672	-		CCNA_03269	0.28	-0.6
3,438,672	-		CCNA_03269	0.28	-1.5
3,438,674	-		CCNA_03269	0.28	-1.7
3,438,696	-		CCNA_03269	0.31	-3.4
3,438,736	-		CCNA_03269	0.35	+2.1
3,438,770	-		CCNA_03269	0.38	-0.9
3,438,789	-		CCNA_03269	0.40	-1.4
3,438,789	-		CCNA_03269	0.40	-0.8
3,438,789	-		CCNA_03269	0.40	-3.4
3,438,800	+		CCNA_03269	0.41	+0.5
3,438,837	+		CCNA_03269	0.45	+1.0
3,438,845	-		CCNA_03269	0.46	+1.1
3,438,859	+		CCNA_03269	0.47	+0.7
3,438,867	-		CCNA_03269	0.48	-0.6
3,438,867	-		CCNA_03269	0.48	-1.1
3,438,867	-		CCNA_03269	0.48	-0.4
3,438,867	-		CCNA_03269	0.48	+1.0
3,438,893	+		CCNA_03269	0.51	-0.1
3,438,959	-		CCNA_03269	0.57	-0.1
3,438,984	-		CCNA_03269	0.60	-1.0
3,439,011	-		CCNA_03269	0.63	+0.5
3,439,034	+		CCNA_03269	0.65	+0.5
3,439,050	+		CCNA_03269	0.67	-0.7
3,439,110	-		CCNA_03269	0.73	+0.7
3,439,112	-		CCNA_03269	0.73	+0.3
3,439,112	-		CCNA_03269	0.73	+1.1
3,439,159	+		CCNA_03269	0.78	-0.2
3,439,187	+		CCNA_03269	0.81	+0.5
3,439,195	-		CCNA_03269	0.82	-0.6
3,439,205	-		CCNA_03269	0.83	-0.4
3,439,219	-		CCNA_03269	0.84	+1.3
3,439,239	-		CCNA_03269	0.86	-0.0
3,439,242	+		CCNA_03269	0.86	-1.3
3,439,302	+				-0.3
3,439,305	-				-0.0
3,439,305	-				+0.2
3,439,305	-				+0.2
3,439,305	-				+0.9
3,439,338	+				-1.1
3,439,352	+				-0.7
3,439,368	-				+1.7
3,439,380	+				+2.1
3,439,406	-				+0.7
3,439,406	-				+0.2
3,439,417	-				+1.0
3,439,436	+				+0.4
3,439,459	-				+1.5
3,439,459	-				+1.0
3,439,505	+		CCNA_03271	0.10	-0.5
3,439,515	-		CCNA_03271	0.11	+0.9
3,439,520	-		CCNA_03271	0.11	-0.2
3,439,536	-		CCNA_03271	0.13	+0.5
3,439,550	+		CCNA_03271	0.14	+3.1
3,439,597	-		CCNA_03271	0.18	+1.3
3,439,635	+		CCNA_03271	0.21	-0.4
3,439,699	+		CCNA_03271	0.26	+1.1
3,439,707	-		CCNA_03271	0.27	+1.8
3,439,707	-		CCNA_03271	0.27	+1.4
3,439,714	+		CCNA_03271	0.28	+2.1
3,439,714	+		CCNA_03271	0.28	-0.2
3,439,714	+		CCNA_03271	0.28	+1.3
3,439,714	-		CCNA_03271	0.28	+1.2
3,439,714	-		CCNA_03271	0.28	+1.1
3,439,719	+		CCNA_03271	0.28	-2.2
3,439,719	+		CCNA_03271	0.28	-0.7
3,439,719	+		CCNA_03271	0.28	-1.3
3,439,727	-		CCNA_03271	0.29	+1.4
3,439,727	-		CCNA_03271	0.29	+0.5
3,439,727	-		CCNA_03271	0.29	+0.9
3,439,727	-		CCNA_03271	0.29	+0.8
3,439,727	-		CCNA_03271	0.29	+0.8
3,439,730	-		CCNA_03271	0.29	+0.6
3,439,737	+		CCNA_03271	0.29	-1.5
3,439,779	+		CCNA_03271	0.33	+1.3
3,439,794	+		CCNA_03271	0.34	-1.6
3,439,811	+		CCNA_03271	0.36	-0.7
3,439,821	-		CCNA_03271	0.36	+1.0
3,439,828	+		CCNA_03271	0.37	-0.9
3,439,855	-		CCNA_03271	0.39	+1.2
3,439,871	+		CCNA_03271	0.41	-0.9
3,439,873	+		CCNA_03271	0.41	-1.4
3,439,874	-		CCNA_03271	0.41	+1.1
3,439,874	-		CCNA_03271	0.41	+1.0
3,439,874	-		CCNA_03271	0.41	+0.6
3,439,881	-		CCNA_03271	0.41	+0.9
3,439,915	+		CCNA_03271	0.44	-0.5
3,439,973	+		CCNA_03271	0.49	-2.2
3,439,981	-		CCNA_03271	0.50	+0.7
3,439,981	-		CCNA_03271	0.50	+0.9
3,440,033	-		CCNA_03271	0.54	+1.0
3,440,033	-		CCNA_03271	0.54	+1.2
3,440,095	-		CCNA_03271	0.59	+1.0
3,440,154	-		CCNA_03271	0.64	+2.1
3,440,154	-		CCNA_03271	0.64	+0.6
3,440,192	-		CCNA_03271	0.67	+0.8
3,440,194	+		CCNA_03271	0.67	+0.5
3,440,202	-		CCNA_03271	0.68	+0.9
3,440,216	+		CCNA_03271	0.69	+2.1
3,440,216	+		CCNA_03271	0.69	-0.8
3,440,216	+		CCNA_03271	0.69	-1.2
3,440,224	-		CCNA_03271	0.70	-0.5
3,440,224	-		CCNA_03271	0.70	+1.1
3,440,236	+		CCNA_03271	0.71	-0.5
3,440,244	-		CCNA_03271	0.71	+1.1
3,440,249	+		CCNA_03271	0.72	-0.7
3,440,257	-		CCNA_03271	0.73	+2.1
3,440,257	-		CCNA_03271	0.73	+1.0
3,440,257	-		CCNA_03271	0.73	+1.1
3,440,257	-		CCNA_03271	0.73	+0.5
3,440,257	-		CCNA_03271	0.73	+0.7
3,440,297	+		CCNA_03271	0.76	+1.1
3,440,303	-		CCNA_03271	0.76	+1.3
3,440,308	-		CCNA_03271	0.77	+1.0
3,440,313	-		CCNA_03271	0.77	+1.2
3,440,350	+		CCNA_03271	0.80	+1.1
3,440,367	-		CCNA_03271	0.82	+0.9
3,440,397	-		CCNA_03271	0.84	+0.5
3,440,454	+		CCNA_03271	0.89	+2.1
3,440,469	-				+1.4
3,440,491	-				+0.7
3,440,491	-				+1.2
3,440,502	+				+0.1
3,440,507	+				+0.1
3,440,507	+				-0.7
3,440,515	-				+0.6
3,440,515	-				+1.1
3,440,534	+				-1.7
3,440,542	-				+1.0
3,440,591	-				+1.1
3,440,591	-				+0.6
3,440,614	-				+0.9
3,440,616	-				+0.3
3,440,645	-				-1.5
3,440,726	+				+0.4
3,440,734	-				-0.9
3,440,734	-				+0.1
3,440,735	+				+0.6
3,440,736	-				-1.6
3,440,751	+		CCNA_03270	0.13	+1.6
3,440,759	-		CCNA_03270	0.14	-0.5
3,440,777	+		CCNA_03270	0.18	+0.2
3,440,787	+		CCNA_03270	0.20	+0.4
3,440,795	-		CCNA_03270	0.22	+0.1
3,440,795	-		CCNA_03270	0.22	-1.1
3,440,828	-		CCNA_03270	0.29	+2.1
3,440,863	+		CCNA_03270	0.37	-1.0
3,440,871	-		CCNA_03270	0.39	-2.6
3,440,872	-		CCNA_03270	0.39	+2.1
3,440,885	+		CCNA_03270	0.42	-0.5
3,440,893	-		CCNA_03270	0.44	+0.8
3,440,893	-		CCNA_03270	0.44	-3.4
3,440,908	-		CCNA_03270	0.47	+0.2
3,440,910	+		CCNA_03270	0.47	-0.0
3,440,910	+		CCNA_03270	0.47	+1.4
3,440,910	+		CCNA_03270	0.47	+1.3
3,440,916	+		CCNA_03270	0.49	+0.7
3,440,924	-		CCNA_03270	0.50	+0.9
3,440,926	+		CCNA_03270	0.51	-1.1
3,440,946	+		CCNA_03270	0.55	-0.4
3,440,958	-		CCNA_03270	0.58	-1.1
3,440,960	+		CCNA_03270	0.58	-0.5
3,440,968	-		CCNA_03270	0.60	+0.7
3,440,968	-		CCNA_03270	0.60	-1.1
3,441,008	-		CCNA_03270	0.69	+2.1
3,441,017	+		CCNA_03270	0.71	+0.3
3,441,027	+		CCNA_03270	0.73	+0.1
3,441,027	+		CCNA_03270	0.73	-0.4
3,441,035	-		CCNA_03270	0.75	-0.7
3,441,035	-		CCNA_03270	0.75	-2.7
3,441,070	-		CCNA_03270	0.82	+0.5
3,441,098	+		CCNA_03270	0.88	+0.2
3,441,115	+				+0.9
3,441,127	-				-1.1
3,441,160	+				-0.1
3,441,160	+				-1.5
3,441,188	+				+1.0
3,441,226	+				-0.4
3,441,232	+				-0.3
3,441,236	+				-1.1
3,441,239	-				-0.9
3,441,277	+				+0.3
3,441,277	+				-0.1
3,441,292	+				+1.3
3,441,300	-				+2.1
3,441,307	+				-0.1
3,441,324	-				-0.7
3,441,348	+				-1.4
3,441,356	-				-2.8
3,441,359	+		CCNA_03272	0.10	+2.7
3,441,366	-		CCNA_03272	0.11	-1.5
3,441,376	+		CCNA_03272	0.11	-0.4
3,441,379	-		CCNA_03272	0.12	+1.7
3,441,437	-		CCNA_03272	0.16	-1.4
3,441,450	-		CCNA_03272	0.17	-0.2
3,441,493	+		CCNA_03272	0.20	-0.2
3,441,494	-		CCNA_03272	0.20	-0.6
3,441,528	-		CCNA_03272	0.22	-2.6
3,441,541	+		CCNA_03272	0.23	-0.5
3,441,544	+		CCNA_03272	0.23	-0.9
3,441,582	+		CCNA_03272	0.26	+1.2
3,441,582	+		CCNA_03272	0.26	+0.3
3,441,585	-		CCNA_03272	0.26	-0.8
3,441,585	-		CCNA_03272	0.26	+0.5
3,441,587	+		CCNA_03272	0.26	-1.0