Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03108

Experiment: PYE 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep1 58 days
3,256,596	+		CCNA_03106	0.22	-1.0
3,256,596	+		CCNA_03106	0.22	-0.0
3,256,604	-		CCNA_03106	0.25	-1.9
3,256,604	-		CCNA_03106	0.25	-0.1
3,256,604	-		CCNA_03106	0.25	-1.4
3,256,615	-		CCNA_03106	0.29	+0.5
3,256,691	+		CCNA_03106	0.57	+0.1
3,256,730	-		CCNA_03106	0.71	-1.6
3,256,756	+		CCNA_03106	0.80	+1.3
3,256,766	+		CCNA_03106	0.84	+1.2
3,256,768	-		CCNA_03106	0.84	+1.8
3,256,769	-		CCNA_03106	0.85	-0.9
3,256,805	+				+2.1
3,256,805	+				-0.1
3,256,811	-				-0.2
3,256,846	-				+1.5
3,256,913	-				+0.7
3,256,994	-				+2.1
3,257,004	+				-0.9
3,257,023	-				+1.2
3,257,063	-				+0.5
3,257,155	+		CCNA_03107	0.30	+0.6
3,257,160	+		CCNA_03107	0.31	+0.7
3,257,168	-		CCNA_03107	0.33	-0.2
3,257,168	-		CCNA_03107	0.33	+0.5
3,257,279	-		CCNA_03107	0.59	+0.2
3,257,279	-		CCNA_03107	0.59	+0.4
3,257,301	+		CCNA_03107	0.65	+1.5
3,257,301	+		CCNA_03107	0.65	+1.7
3,257,306	+		CCNA_03107	0.66	+0.6
3,257,306	+		CCNA_03107	0.66	+1.1
3,257,306	+		CCNA_03107	0.66	+1.1
3,257,347	-		CCNA_03107	0.75	+1.5
3,257,370	+		CCNA_03107	0.81	+0.9
3,257,433	-				+0.3
3,257,539	-				+1.8
3,257,641	-				+0.7
3,257,687	+				+1.0
3,257,707	-				+0.8
3,257,715	+				-0.5
3,257,734	+				-1.7
3,257,737	+				-1.5
3,257,754	-				+1.2
3,257,759	-				+0.8
3,257,889	+				-1.5
3,257,896	+				+0.5
3,257,937	-		CCNA_03108	0.11	+1.1
3,257,945	+		CCNA_03108	0.11	+0.4
3,258,030	-		CCNA_03108	0.14	+1.8
3,258,031	+		CCNA_03108	0.14	+0.3
3,258,032	+		CCNA_03108	0.14	-0.9
3,258,032	+		CCNA_03108	0.14	-0.6
3,258,039	-		CCNA_03108	0.14	+1.1
3,258,039	-		CCNA_03108	0.14	+1.3
3,258,040	-		CCNA_03108	0.14	+0.8
3,258,052	+		CCNA_03108	0.15	+2.1
3,258,068	-		CCNA_03108	0.15	+1.2
3,258,133	-		CCNA_03108	0.17	+1.3
3,258,153	-		CCNA_03108	0.18	+1.5
3,258,161	+		CCNA_03108	0.18	-1.0
3,258,224	-		CCNA_03108	0.20	+3.2
3,258,224	-		CCNA_03108	0.20	+1.2
3,258,232	-		CCNA_03108	0.20	+1.4
3,258,320	+		CCNA_03108	0.23	-0.5
3,258,400	-		CCNA_03108	0.25	+1.1
3,258,456	-		CCNA_03108	0.27	+1.2
3,258,456	-		CCNA_03108	0.27	+1.1
3,258,466	-		CCNA_03108	0.27	+1.2
3,258,479	+		CCNA_03108	0.28	-0.6
3,258,501	+		CCNA_03108	0.28	+0.1
3,258,540	+		CCNA_03108	0.29	+0.2
3,258,547	+		CCNA_03108	0.30	+0.1
3,258,555	-		CCNA_03108	0.30	+1.2
3,258,569	+		CCNA_03108	0.30	+0.1
3,258,569	+		CCNA_03108	0.30	-1.4
3,258,571	-		CCNA_03108	0.30	+0.8
3,258,573	+		CCNA_03108	0.30	-1.7
3,258,598	-		CCNA_03108	0.31	+1.0
3,258,598	-		CCNA_03108	0.31	+1.1
3,258,624	-		CCNA_03108	0.32	+1.5
3,258,625	+		CCNA_03108	0.32	-0.4
3,258,633	-		CCNA_03108	0.32	+1.6
3,258,647	+		CCNA_03108	0.33	-1.2
3,258,695	-		CCNA_03108	0.34	+1.8
3,258,813	-		CCNA_03108	0.38	+0.5
3,258,813	-		CCNA_03108	0.38	+1.2
3,258,813	-		CCNA_03108	0.38	+1.0
3,258,813	-		CCNA_03108	0.38	+0.6
3,258,828	+		CCNA_03108	0.38	-2.9
3,258,828	+		CCNA_03108	0.38	-0.5
3,258,836	-		CCNA_03108	0.38	+1.4
3,258,836	-		CCNA_03108	0.38	+0.9
3,258,911	-		CCNA_03108	0.41	+1.3
3,258,915	-		CCNA_03108	0.41	+0.9
3,258,928	-		CCNA_03108	0.41	-1.3
3,258,936	+		CCNA_03108	0.41	-2.0
3,258,945	+		CCNA_03108	0.42	+1.0
3,258,953	-		CCNA_03108	0.42	+1.7
3,258,953	-		CCNA_03108	0.42	+1.1
3,258,960	-		CCNA_03108	0.42	+1.2
3,258,999	-		CCNA_03108	0.43	+1.0
3,259,055	+		CCNA_03108	0.45	-0.2
3,259,055	+		CCNA_03108	0.45	+1.7
3,259,056	+		CCNA_03108	0.45	+0.4
3,259,056	+		CCNA_03108	0.45	-3.0
3,259,063	-		CCNA_03108	0.45	+1.9
3,259,063	-		CCNA_03108	0.45	+1.3
3,259,064	-		CCNA_03108	0.45	+1.2
3,259,076	+		CCNA_03108	0.46	+0.8
3,259,103	-		CCNA_03108	0.47	+2.1
3,259,162	+		CCNA_03108	0.48	+1.3
3,259,222	+		CCNA_03108	0.50	+0.7
3,259,230	-		CCNA_03108	0.50	+1.9
3,259,262	+		CCNA_03108	0.51	-2.5
3,259,270	-		CCNA_03108	0.52	+0.4
3,259,270	-		CCNA_03108	0.52	+1.4
3,259,270	-		CCNA_03108	0.52	+1.1
3,259,298	+		CCNA_03108	0.52	-0.9
3,259,298	+		CCNA_03108	0.52	-0.2
3,259,306	-		CCNA_03108	0.53	+3.0
3,259,312	-		CCNA_03108	0.53	+1.5
3,259,312	-		CCNA_03108	0.53	-1.0
3,259,334	-		CCNA_03108	0.54	-0.5
3,259,451	-		CCNA_03108	0.57	+1.9
3,259,501	-		CCNA_03108	0.59	+1.3
3,259,519	-		CCNA_03108	0.59	+1.5
3,259,553	+		CCNA_03108	0.60	+0.1
3,259,555	-		CCNA_03108	0.60	+1.0
3,259,556	-		CCNA_03108	0.60	+0.6
3,259,560	-		CCNA_03108	0.60	+1.5
3,259,598	+		CCNA_03108	0.62	+0.5
3,259,650	-		CCNA_03108	0.63	+0.3
3,259,752	-		CCNA_03108	0.66	+1.3
3,259,774	-		CCNA_03108	0.67	+1.4
3,259,776	+		CCNA_03108	0.67	+1.2
3,259,779	-		CCNA_03108	0.67	+1.5
3,259,794	+		CCNA_03108	0.68	+2.7
3,259,927	+		CCNA_03108	0.72	+2.1
3,259,927	-		CCNA_03108	0.72	-0.1
3,259,941	+		CCNA_03108	0.72	-2.1
3,260,006	+		CCNA_03108	0.74	-0.5
3,260,006	+		CCNA_03108	0.74	+1.0
3,260,006	+		CCNA_03108	0.74	-1.2
3,260,014	-		CCNA_03108	0.74	+1.3
3,260,014	-		CCNA_03108	0.74	+0.2
3,260,014	-		CCNA_03108	0.74	+1.3
3,260,014	-		CCNA_03108	0.74	+1.7
3,260,014	-		CCNA_03108	0.74	+2.2
3,260,014	-		CCNA_03108	0.74	+2.1
3,260,041	+		CCNA_03108	0.75	-0.6
3,260,049	-		CCNA_03108	0.75	+1.6
3,260,070	+		CCNA_03108	0.76	-0.3
3,260,073	-		CCNA_03108	0.76	+0.1
3,260,073	-		CCNA_03108	0.76	+1.6
3,260,080	-		CCNA_03108	0.76	+1.4
3,260,085	-		CCNA_03108	0.76	+1.9
3,260,085	-		CCNA_03108	0.76	+1.9
3,260,085	-		CCNA_03108	0.76	+1.3
3,260,087	+		CCNA_03108	0.77	-2.3
3,260,095	-		CCNA_03108	0.77	+1.9
3,260,101	+		CCNA_03108	0.77	+0.2
3,260,101	+		CCNA_03108	0.77	-1.9
3,260,109	-		CCNA_03108	0.77	+1.7
3,260,127	+		CCNA_03108	0.78	-0.5
3,260,132	+		CCNA_03108	0.78	-1.7
3,260,140	-		CCNA_03108	0.78	+2.2
3,260,164	+		CCNA_03108	0.79	-0.9
3,260,217	-		CCNA_03108	0.80	-0.9
3,260,229	+		CCNA_03108	0.81	-3.3
3,260,266	-		CCNA_03108	0.82	+0.1
3,260,266	-		CCNA_03108	0.82	+0.1
3,260,284	-		CCNA_03108	0.83	+1.4
3,260,294	-		CCNA_03108	0.83	+1.5
3,260,312	-		CCNA_03108	0.83	+0.9
3,260,320	-		CCNA_03108	0.84	+0.7
3,260,331	+		CCNA_03108	0.84	-0.8
3,260,331	+		CCNA_03108	0.84	+0.3
3,260,336	+		CCNA_03108	0.84	+0.5
3,260,360	-		CCNA_03108	0.85	+1.4
3,260,374	-		CCNA_03108	0.85	+1.2
3,260,376	-		CCNA_03108	0.85	+1.8
3,260,379	+		CCNA_03108	0.85	-2.5
3,260,389	+		CCNA_03108	0.86	-2.5
3,260,397	-		CCNA_03108	0.86	+2.0
3,260,397	-		CCNA_03108	0.86	+1.3
3,260,451	-		CCNA_03108	0.88	+2.3
3,260,456	-		CCNA_03108	0.88	+1.2
3,260,456	-		CCNA_03108	0.88	-0.2
3,260,479	+		CCNA_03108	0.88	-0.5
3,260,490	+		CCNA_03108	0.89	-2.1
3,260,515	-		CCNA_03108	0.90	+1.1
3,260,527	-		CCNA_03108	0.90	+1.2
3,260,532	-				+1.6
3,260,533	+				-1.2
3,260,548	+				-1.1
3,260,548	+				-1.0
3,260,548	+				+0.8
3,260,548	+				-1.9
3,260,556	-				+1.9
3,260,556	-				+0.8
3,260,556	-				+1.5
3,260,556	-				+0.7
3,260,629	+				-1.9
3,260,629	+				-1.1
3,260,629	+				-1.4
3,260,637	-				+1.5
3,260,637	-				+0.9
3,260,657	+				-1.9
3,260,657	+				+2.1
3,260,665	-				+0.4
3,260,665	-				+1.2
3,260,692	-				+1.5
3,260,694	+				-1.7
3,260,727	-				+1.6
3,260,728	+				+0.4
3,260,767	-				+2.0
3,260,809	-				+1.2
3,260,917	+				-1.2
3,260,933	-				+0.6
3,260,938	-				+0.1
3,260,964	-				+1.4
3,261,068	+				+0.2
3,261,068	+				-1.5
3,261,068	+				-2.0
3,261,068	+				-0.7
3,261,068	+				+0.4
3,261,068	+				+2.7
3,261,068	+				+0.3
3,261,068	+				-1.5
3,261,068	+				+0.3
3,261,068	+				-0.6
3,261,068	+				+0.5
3,261,068	+				-1.7
3,261,068	+				-0.8
3,261,068	+				-0.3
3,261,068	+				-0.4
3,261,068	+				+0.0
3,261,068	+				-2.1
3,261,068	+				+2.1
3,261,068	+				+2.4
3,261,068	+				-0.6
3,261,068	+				-3.0
3,261,068	+				+0.1
3,261,068	+				+0.8
3,261,068	+				-3.6
3,261,068	+				-2.1
3,261,068	+				+1.5
3,261,068	+				-1.2
3,261,068	+				+1.1
3,261,068	+				-3.0
3,261,068	+				-1.2
3,261,068	+				+1.9
3,261,068	+				-2.6
3,261,068	+				+0.3
3,261,068	+				-1.0
3,261,068	+				+1.3
3,261,068	+				-0.2
3,261,068	+				-2.5
3,261,068	+				+0.2
3,261,068	+				-1.8
3,261,068	+				-1.5
3,261,068	+				+0.5
3,261,068	+				-3.2
3,261,068	+				+0.4
3,261,068	+				-1.0
3,261,069	+				+1.4
3,261,069	+				-1.0
3,261,069	+				+0.3
3,261,069	+				-0.5
3,261,069	+				+0.3
3,261,069	+				+0.6
3,261,069	+				-1.3
3,261,069	+				-1.7
3,261,069	+				-1.3
3,261,069	+				+2.1
3,261,069	+				-2.7
3,261,069	+				-1.5
3,261,069	+				+1.0
3,261,069	+				+0.2
3,261,069	+				-0.2
3,261,069	+				-1.4
3,261,069	+				+1.6
3,261,069	+				+0.4
3,261,069	+				+3.1
3,261,069	+				+2.1
3,261,069	+				-0.5
3,261,069	+				-2.6
3,261,069	+				-0.3
3,261,069	+				+0.5
3,261,069	+				+0.2
3,261,069	+				-1.6
3,261,069	+				-1.0
3,261,069	+				-0.1
3,261,069	+				+1.4
3,261,069	+				-0.7
3,261,069	+				+1.9
3,261,069	+				+1.1
3,261,069	+				-1.5
3,261,069	+				+0.0
3,261,069	+				+0.1
3,261,069	+				-2.3
3,261,069	+				-0.7
3,261,069	+				-1.0
3,261,069	+				+0.5
3,261,069	+				-0.1
3,261,069	+				+0.4
3,261,069	+				-0.8
3,261,069	+				-2.7
3,261,069	+				+0.3
3,261,069	+				+0.1
3,261,069	+				-0.8
3,261,069	+				-2.7
3,261,069	+				-0.2
3,261,069	+				-0.9
3,261,069	+				-0.4
3,261,069	+				+2.4
3,261,069	+				-0.3
3,261,069	+				+1.2
3,261,069	+				-1.0
3,261,069	+				-1.0
3,261,069	+				+1.2
3,261,069	+				+1.9
3,261,069	+				+0.2
3,261,069	+				-0.0
3,261,069	+				+1.1
3,261,069	+				-0.6
3,261,069	+				-0.1
3,261,069	+				-1.0
3,261,069	+				-1.4
3,261,069	+				-1.3
3,261,069	+				+0.0
3,261,069	+				+0.7
3,261,069	+				-1.8
3,261,069	+				-1.7
3,261,070	+				+0.9
3,261,070	+				-0.2
3,261,070	+				+0.1
3,261,076	-				+1.0
3,261,076	-				-0.9
3,261,076	-				-0.5
3,261,076	-				+1.5
3,261,076	-				+1.7
3,261,076	-				-0.0
3,261,076	-				-2.9
3,261,076	-				+1.6
3,261,076	-				+1.8
3,261,076	-				+1.3
3,261,076	-				-0.5
3,261,076	-				+1.1
3,261,076	-				-0.6
3,261,076	-				-1.2
3,261,076	-				+0.7
3,261,076	-				+1.2
3,261,076	-				+1.9
3,261,076	-				-0.5
3,261,076	-				-0.6
3,261,076	-				-2.2
3,261,076	-				-0.2
3,261,076	-				-0.0
3,261,076	-				+1.6
3,261,076	-				-2.2
3,261,076	-				-0.9
3,261,076	-				-0.2
3,261,076	-				-1.0
3,261,076	-				-0.4
3,261,076	-				-1.2
3,261,076	-				-2.0
3,261,076	-				-1.8
3,261,076	-				-0.1
3,261,076	-				+0.5
3,261,076	-				+1.1
3,261,076	-				-2.3
3,261,076	-				-1.4
3,261,076	-				+0.3
3,261,076	-				-1.0
3,261,076	-				-0.4
3,261,076	-				-2.0
3,261,076	-				-3.6
3,261,077	-				+0.9
3,261,077	-				-0.7
3,261,077	-				-0.4
3,261,077	-				+0.4
3,261,077	-				+0.6
3,261,077	-				+0.0
3,261,077	-				+2.1
3,261,077	-				-0.7
3,261,077	-				+0.3
3,261,077	-				+0.7
3,261,077	-				-2.3
3,261,077	-				+2.1
3,261,077	-				-0.4
3,261,077	-				-3.7
3,261,077	-				+0.9
3,261,077	-				-1.0
3,261,077	-				-0.7
3,261,077	-				-0.5
3,261,077	-				-0.2
3,261,077	-				+0.2
3,261,077	-				-0.8
3,261,077	-				-1.2
3,261,077	-				-0.3
3,261,077	-				-0.0
3,261,077	-				-0.2
3,261,077	-				-0.6
3,261,077	-				-1.0
3,261,077	-				-2.1
3,261,077	-				+0.1
3,261,077	-				+0.0
3,261,077	-				+2.1
3,261,077	-				-3.1
3,261,077	-				+0.0
3,261,077	-				-0.6
3,261,077	-				-0.4
3,261,077	-				+0.2
3,261,077	-				-0.5
3,261,077	-				+2.4
3,261,077	-				-2.2
3,261,077	-				+2.7
3,261,077	-				-0.7
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3,261,409	-		CCNA_03110	0.13	-2.3
3,261,409	-		CCNA_03110	0.13	-2.1
3,261,450	-		CCNA_03110	0.24	-3.3
3,261,477	-		CCNA_03110	0.32	-2.5
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3,261,657	-		CCNA_03110	0.80	-1.1
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