Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01694

Experiment: PYE 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep1 58 days
1,820,847	-				-1.5
1,820,896	-				-1.8
1,820,903	-				-1.6
1,821,227	-		CCNA_01693	0.46	+0.3
1,821,276	+		CCNA_01693	0.52	-0.8
1,821,291	+		CCNA_01693	0.53	-1.8
1,821,327	+		CCNA_01693	0.57	+0.8
1,821,335	-		CCNA_01693	0.58	-0.8
1,821,347	+		CCNA_01693	0.59	-1.9
1,821,372	+		CCNA_01693	0.62	-2.0
1,821,396	+		CCNA_01693	0.65	-2.6
1,821,412	-		CCNA_01693	0.67	-2.6
1,821,421	+		CCNA_01693	0.68	-1.6
1,821,429	-		CCNA_01693	0.69	-0.8
1,821,429	-		CCNA_01693	0.69	-1.5
1,821,429	-		CCNA_01693	0.69	+2.3
1,821,474	-		CCNA_01693	0.74	+0.8
1,821,506	+		CCNA_01693	0.77	+1.3
1,821,543	-		CCNA_01693	0.81	-1.7
1,821,543	-		CCNA_01693	0.81	+2.3
1,821,543	-		CCNA_01693	0.81	-1.1
1,821,556	+		CCNA_01693	0.83	-1.7
1,821,564	-		CCNA_01693	0.84	-1.1
1,821,614	-		CCNA_01693	0.89	+0.8
1,821,616	+		CCNA_01693	0.89	-0.7
1,821,619	-		CCNA_01693	0.90	+1.3
1,821,624	-				-3.1
1,821,629	-				-3.1
1,821,668	-				+2.3
1,821,683	+				+2.3
1,821,689	-				-1.8
1,821,781	-				-2.4
1,821,808	+				-2.4
1,821,808	+				-1.0
1,821,815	+				-0.5
1,821,823	-				-1.1
1,821,842	+				-3.5
1,821,843	+				-2.0
1,821,958	+		CCNA_01694	0.12	-0.7
1,821,972	+		CCNA_01694	0.13	-2.3
1,822,017	+		CCNA_01694	0.15	-2.8
1,822,026	-		CCNA_01694	0.16	-4.2
1,822,106	-		CCNA_01694	0.20	-3.4
1,822,208	-		CCNA_01694	0.25	-3.9
1,822,238	+		CCNA_01694	0.27	-0.5
1,822,238	+		CCNA_01694	0.27	+1.7
1,822,246	-		CCNA_01694	0.27	+0.7
1,822,246	-		CCNA_01694	0.27	+0.6
1,822,248	+		CCNA_01694	0.27	-2.1
1,822,248	+		CCNA_01694	0.27	-0.1
1,822,256	-		CCNA_01694	0.27	-1.3
1,822,256	-		CCNA_01694	0.27	-1.9
1,822,279	+		CCNA_01694	0.29	-0.3
1,822,284	+		CCNA_01694	0.29	-0.5
1,822,308	+		CCNA_01694	0.30	-0.7
1,822,316	-		CCNA_01694	0.31	-0.9
1,822,323	-		CCNA_01694	0.31	-0.3
1,822,362	+		CCNA_01694	0.33	+2.3
1,822,370	+		CCNA_01694	0.33	-1.6
1,822,395	+		CCNA_01694	0.35	-1.2
1,822,553	+		CCNA_01694	0.43	-2.4
1,822,553	+		CCNA_01694	0.43	-0.8
1,822,553	+		CCNA_01694	0.43	-2.1
1,822,553	+		CCNA_01694	0.43	-1.5
1,822,553	+		CCNA_01694	0.43	+2.9
1,822,553	+		CCNA_01694	0.43	-1.3
1,822,561	-		CCNA_01694	0.43	-0.2
1,822,561	-		CCNA_01694	0.43	+2.0
1,822,561	-				-2.3
1,822,561	-		CCNA_01694	0.43	-2.8
1,822,587	+		CCNA_01694	0.45	-1.4
1,822,595	-		CCNA_01694	0.45	-0.7
1,822,600	-		CCNA_01694	0.45	-2.4
1,822,610	+		CCNA_01694	0.46	+0.1
1,822,618	-		CCNA_01694	0.46	-2.2
1,822,645	-		CCNA_01694	0.48	-0.9
1,822,715	-		CCNA_01694	0.51	-0.7
1,822,757	+		CCNA_01694	0.53	+0.2
1,822,764	+		CCNA_01694	0.54	-0.3
1,822,772	-		CCNA_01694	0.54	+0.7
1,822,772	-		CCNA_01694	0.54	+0.3
1,822,772	-		CCNA_01694	0.54	-0.6
1,822,810	+		CCNA_01694	0.56	+2.3
1,822,812	+		CCNA_01694	0.56	+1.7
1,822,835	-		CCNA_01694	0.57	-0.3
1,822,844	+		CCNA_01694	0.58	-0.7
1,822,845	-		CCNA_01694	0.58	-3.9
1,822,915	+		CCNA_01694	0.62	-1.4
1,822,969	-		CCNA_01694	0.64	-2.1
1,823,015	+		CCNA_01694	0.67	-1.8
1,823,017	+		CCNA_01694	0.67	+0.7
1,823,020	+		CCNA_01694	0.67	-0.3
1,823,042	+		CCNA_01694	0.68	-0.3
1,823,089	+		CCNA_01694	0.71	-1.9
1,823,096	+		CCNA_01694	0.71	-1.5
1,823,153	-		CCNA_01694	0.74	-2.4
1,823,167	+		CCNA_01694	0.75	+0.2
1,823,175	-		CCNA_01694	0.75	-2.8
1,823,188	-		CCNA_01694	0.76	-3.3
1,823,188	-		CCNA_01694	0.76	-0.5
1,823,188	-		CCNA_01694	0.76	-0.8
1,823,190	+		CCNA_01694	0.76	-0.8
1,823,218	+		CCNA_01694	0.77	+2.3
1,823,221	+		CCNA_01694	0.77	+0.3
1,823,221	+		CCNA_01694	0.77	-0.8
1,823,281	-		CCNA_01694	0.80	-2.8
1,823,325	-		CCNA_01694	0.83	-1.9
1,823,331	+		CCNA_01694	0.83	+0.3
1,823,391	-		CCNA_01694	0.86	+2.0
1,823,391	-		CCNA_01694	0.86	-1.2
1,823,412	+		CCNA_01694	0.87	+0.0
1,823,428	+		CCNA_01694	0.88	+1.0
1,823,428	+		CCNA_01694	0.88	-0.8
1,823,428	+		CCNA_01694	0.88	+1.5
1,823,500	-				-2.4
1,823,514	+				+0.1
1,823,514	+				-1.0
1,823,522	-				-2.8
1,823,546	-				+1.2
1,823,620	+				-3.1
1,823,620	+				-0.4
1,823,620	+				+0.7
1,823,628	-				-2.4
1,823,665	+				-0.7
1,823,673	-				+0.9
1,823,675	+				+1.3
1,823,675	+				+2.3
1,823,683	-				-0.7
1,823,683	-				+0.5
1,823,683	-				+0.6
1,823,683	-				-0.6
1,823,729	-				+0.6
1,823,736	-				+0.7
1,823,782	+				+0.3
1,823,826	-				-1.3
1,823,826	-				-0.8
1,823,881	-				-0.8
1,823,908	+				-1.5
1,823,962	+				-1.6
1,823,973	-		CCNA_01695	0.10	-0.0
1,823,979	-		CCNA_01695	0.10	+4.9
1,824,004	-		CCNA_01695	0.11	-0.0
1,824,022	-		CCNA_01695	0.12	-0.5
1,824,082	+		CCNA_01695	0.14	-0.5
1,824,123	+		CCNA_01695	0.15	-0.7
1,824,131	-		CCNA_01695	0.16	-1.8
1,824,143	-		CCNA_01695	0.16	-1.4
1,824,161	+		CCNA_01695	0.17	-0.3
1,824,162	-		CCNA_01695	0.17	+2.3
1,824,167	+		CCNA_01695	0.17	-3.5
1,824,175	-		CCNA_01695	0.17	-1.8
1,824,175	-		CCNA_01695	0.17	-1.9
1,824,194	+		CCNA_01695	0.18	-1.3
1,824,206	-		CCNA_01695	0.18	+2.3
1,824,220	+		CCNA_01695	0.19	+1.1
1,824,228	-		CCNA_01695	0.19	+0.7
1,824,245	+		CCNA_01695	0.19	-0.3
1,824,277	-		CCNA_01695	0.21	-1.6
1,824,277	-		CCNA_01695	0.21	-0.1
1,824,284	-		CCNA_01695	0.21	-1.1
1,824,348	+		CCNA_01695	0.23	+1.3
1,824,349	+		CCNA_01695	0.23	-1.2
1,824,356	-		CCNA_01695	0.23	+0.2
1,824,357	-		CCNA_01695	0.23	-0.7
1,824,428	-		CCNA_01695	0.26	+0.2
1,824,438	-		CCNA_01695	0.26	-1.7
1,824,456	-		CCNA_01695	0.27	-0.4
1,824,456	-		CCNA_01695	0.27	-1.3
1,824,461	-		CCNA_01695	0.27	-1.3
1,824,462	+		CCNA_01695	0.27	+1.4
1,824,462	+		CCNA_01695	0.27	+1.3
1,824,470	-		CCNA_01695	0.27	+0.7
1,824,470	-		CCNA_01695	0.27	-2.1
1,824,509	+		CCNA_01695	0.29	-0.1
1,824,521	-		CCNA_01695	0.29	+2.3
1,824,536	+		CCNA_01695	0.29	+2.0
1,824,546	+		CCNA_01695	0.30	-0.8
1,824,555	+		CCNA_01695	0.30	-1.0
1,824,586	-		CCNA_01695	0.31	+0.7