Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01105

Experiment: PYE 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01104 and CCNA_01105 are separated by 55 nucleotidesCCNA_01105 and CCNA_01106 are separated by 58 nucleotidesCCNA_01106 and CCNA_01107 are separated by 3 nucleotidesCCNA_01107 and CCNA_01108 are separated by 60 nucleotides CCNA_01104: CCNA_01104 - glycosyltransferase, at 1,209,940 to 1,211,112 _01104 CCNA_01105: CCNA_01105 - alpha/beta hydrolase family protein, at 1,211,168 to 1,212,040 _01105 CCNA_01106: CCNA_01106 - antitoxin protein parD-2, at 1,212,099 to 1,212,368 _01106 CCNA_01107: CCNA_01107 - toxin protein parE-2, at 1,212,372 to 1,212,590 _01107 CCNA_01108: CCNA_01108 - nucleoside-diphosphate-sugar epimerase, at 1,212,651 to 1,213,511 _01108 Position (kb) 1211 1212 1213Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1211.160 kb on - strandat 1211.210 kb on + strandat 1211.210 kb on + strandat 1211.243 kb on - strandat 1211.257 kb on + strand, within CCNA_01105at 1211.266 kb on + strand, within CCNA_01105at 1211.292 kb on + strand, within CCNA_01105at 1211.300 kb on - strand, within CCNA_01105at 1211.314 kb on + strand, within CCNA_01105at 1211.314 kb on + strand, within CCNA_01105at 1211.314 kb on + strand, within CCNA_01105at 1211.314 kb on + strand, within CCNA_01105at 1211.314 kb on + strand, within CCNA_01105at 1211.314 kb on + strand, within CCNA_01105at 1211.314 kb on + strand, within CCNA_01105at 1211.322 kb on - strand, within CCNA_01105at 1211.322 kb on - strandat 1211.322 kb on - strand, within CCNA_01105at 1211.322 kb on - strand, within CCNA_01105at 1211.322 kb on - strand, within CCNA_01105at 1211.322 kb on - strand, within CCNA_01105at 1211.352 kb on + strand, within CCNA_01105at 1211.426 kb on - strand, within CCNA_01105at 1211.456 kb on + strand, within CCNA_01105at 1211.474 kb on - strand, within CCNA_01105at 1211.521 kb on + strand, within CCNA_01105at 1211.521 kb on + strand, within CCNA_01105at 1211.521 kb on + strand, within CCNA_01105at 1211.529 kb on - strand, within CCNA_01105at 1211.529 kb on - strand, within CCNA_01105at 1211.537 kb on - strand, within CCNA_01105at 1211.547 kb on - strand, within CCNA_01105at 1211.549 kb on + strand, within CCNA_01105at 1211.577 kb on + strand, within CCNA_01105at 1211.577 kb on + strand, within CCNA_01105at 1211.585 kb on - strand, within CCNA_01105at 1211.585 kb on - strand, within CCNA_01105at 1211.585 kb on - strand, within CCNA_01105at 1211.585 kb on - strand, within CCNA_01105at 1211.585 kb on - strand, within CCNA_01105at 1211.585 kb on - strand, within CCNA_01105at 1211.587 kb on + strand, within CCNA_01105at 1211.650 kb on - strand, within CCNA_01105at 1211.669 kb on + strand, within CCNA_01105at 1211.681 kb on + strand, within CCNA_01105at 1211.700 kb on + strand, within CCNA_01105at 1211.700 kb on + strand, within CCNA_01105at 1211.715 kb on + strandat 1211.718 kb on - strand, within CCNA_01105at 1211.718 kb on - strand, within CCNA_01105at 1211.723 kb on - strand, within CCNA_01105at 1211.723 kb on - strand, within CCNA_01105at 1211.760 kb on - strand, within CCNA_01105at 1211.760 kb on - strand, within CCNA_01105at 1211.762 kb on + strand, within CCNA_01105at 1211.795 kb on - strand, within CCNA_01105at 1211.797 kb on + strand, within CCNA_01105at 1211.804 kb on + strand, within CCNA_01105at 1211.805 kb on - strand, within CCNA_01105at 1211.805 kb on - strand, within CCNA_01105at 1211.805 kb on - strand, within CCNA_01105at 1211.811 kb on - strand, within CCNA_01105at 1211.836 kb on + strand, within CCNA_01105at 1211.836 kb on + strand, within CCNA_01105at 1211.836 kb on + strand, within CCNA_01105at 1211.836 kb on + strand, within CCNA_01105at 1211.873 kb on + strand, within CCNA_01105at 1211.892 kb on - strand, within CCNA_01105at 1211.917 kb on + strand, within CCNA_01105at 1211.925 kb on - strand, within CCNA_01105at 1211.930 kb on - strand, within CCNA_01105at 1211.940 kb on - strand, within CCNA_01105at 1211.956 kb on + strandat 1211.966 kb on + strandat 1211.979 kb on + strandat 1211.988 kb on + strandat 1211.988 kb on + strandat 1211.996 kb on - strandat 1211.996 kb on - strandat 1212.101 kb on + strandat 1212.126 kb on + strand, within CCNA_01106at 1212.126 kb on + strand, within CCNA_01106at 1212.126 kb on + strand, within CCNA_01106at 1212.126 kb on + strand, within CCNA_01106at 1212.126 kb on + strand, within CCNA_01106at 1212.134 kb on - strand, within CCNA_01106at 1212.155 kb on + strand, within CCNA_01106at 1212.172 kb on + strand, within CCNA_01106at 1212.182 kb on + strand, within CCNA_01106at 1212.182 kb on + strand, within CCNA_01106at 1212.182 kb on + strand, within CCNA_01106at 1212.182 kb on + strand, within CCNA_01106at 1212.182 kb on + strand, within CCNA_01106at 1212.182 kb on + strand, within CCNA_01106at 1212.182 kb on + strand, within CCNA_01106at 1212.182 kb on + strand, within CCNA_01106at 1212.190 kb on - strand, within CCNA_01106at 1212.190 kb on - strand, within CCNA_01106at 1212.190 kb on - strand, within CCNA_01106at 1212.190 kb on - strand, within CCNA_01106at 1212.190 kb on - strand, within CCNA_01106at 1212.190 kb on - strand, within CCNA_01106at 1212.190 kb on - strand, within CCNA_01106at 1212.190 kb on - strand, within CCNA_01106at 1212.256 kb on + strand, within CCNA_01106at 1212.256 kb on + strand, within CCNA_01106at 1212.264 kb on - strand, within CCNA_01106at 1212.264 kb on - strand, within CCNA_01106at 1212.264 kb on - strand, within CCNA_01106at 1212.269 kb on - strand, within CCNA_01106at 1212.276 kb on + strand, within CCNA_01106at 1212.279 kb on - strand, within CCNA_01106at 1212.284 kb on - strand, within CCNA_01106at 1212.323 kb on + strandat 1212.342 kb on - strandat 1212.358 kb on + strandat 1212.405 kb on + strand, within CCNA_01107at 1212.413 kb on - strand, within CCNA_01107at 1212.422 kb on + strand, within CCNA_01107at 1212.422 kb on + strand, within CCNA_01107at 1212.422 kb on + strand, within CCNA_01107at 1212.422 kb on + strand, within CCNA_01107at 1212.422 kb on + strand, within CCNA_01107at 1212.422 kb on + strand, within CCNA_01107at 1212.427 kb on + strand, within CCNA_01107at 1212.430 kb on - strand, within CCNA_01107at 1212.430 kb on - strand, within CCNA_01107at 1212.432 kb on + strand, within CCNA_01107at 1212.437 kb on + strand, within CCNA_01107at 1212.451 kb on - strand, within CCNA_01107at 1212.451 kb on - strand, within CCNA_01107at 1212.451 kb on - strand, within CCNA_01107at 1212.474 kb on + strand, within CCNA_01107at 1212.487 kb on + strand, within CCNA_01107at 1212.528 kb on - strand, within CCNA_01107at 1212.529 kb on - strand, within CCNA_01107at 1212.587 kb on - strandat 1212.590 kb on + strandat 1212.591 kb on + strandat 1212.591 kb on + strandat 1212.602 kb on + strandat 1212.616 kb on + strandat 1212.618 kb on - strandat 1212.647 kb on + strandat 1212.655 kb on - strandat 1212.662 kb on + strandat 1212.683 kb on - strandat 1212.701 kb on - strandat 1212.732 kb on - strandat 1212.760 kb on + strand, within CCNA_01108at 1212.760 kb on + strand, within CCNA_01108at 1212.760 kb on + strand, within CCNA_01108at 1212.768 kb on - strand, within CCNA_01108at 1212.768 kb on - strand, within CCNA_01108at 1212.817 kb on - strand, within CCNA_01108at 1212.856 kb on - strand, within CCNA_01108at 1212.858 kb on + strand, within CCNA_01108at 1212.869 kb on + strand, within CCNA_01108at 1212.905 kb on - strand, within CCNA_01108at 1212.999 kb on + strand, within CCNA_01108at 1213.003 kb on + strand, within CCNA_01108at 1213.007 kb on - strand, within CCNA_01108at 1213.020 kb on + strand, within CCNA_01108at 1213.038 kb on - strand, within CCNA_01108

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep1 58 days
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1,211,160 - +0.0
1,211,210 + -0.3
1,211,210 + +1.0
1,211,243 - +0.1
1,211,257 + CCNA_01105 0.10 -0.2
1,211,266 + CCNA_01105 0.11 -1.2
1,211,292 + CCNA_01105 0.14 +0.9
1,211,300 - CCNA_01105 0.15 -0.8
1,211,314 + CCNA_01105 0.17 -2.1
1,211,314 + CCNA_01105 0.17 -2.7
1,211,314 + CCNA_01105 0.17 -2.4
1,211,314 + CCNA_01105 0.17 -0.7
1,211,314 + CCNA_01105 0.17 +0.1
1,211,314 + CCNA_01105 0.17 -1.0
1,211,314 + CCNA_01105 0.17 -2.2
1,211,322 - CCNA_01105 0.18 -1.5
1,211,322 - -0.6
1,211,322 - CCNA_01105 0.18 -1.7
1,211,322 - CCNA_01105 0.18 -0.9
1,211,322 - CCNA_01105 0.18 +0.2
1,211,322 - CCNA_01105 0.18 -0.8
1,211,352 + CCNA_01105 0.21 +2.8
1,211,426 - CCNA_01105 0.30 -2.0
1,211,456 + CCNA_01105 0.33 -0.3
1,211,474 - CCNA_01105 0.35 +0.7
1,211,521 + CCNA_01105 0.40 +0.7
1,211,521 + CCNA_01105 0.40 +0.2
1,211,521 + CCNA_01105 0.40 +1.2
1,211,529 - CCNA_01105 0.41 +0.2
1,211,529 - CCNA_01105 0.41 -1.1
1,211,537 - CCNA_01105 0.42 -1.6
1,211,547 - CCNA_01105 0.43 -2.0
1,211,549 + CCNA_01105 0.44 -0.5
1,211,577 + CCNA_01105 0.47 +1.2
1,211,577 + CCNA_01105 0.47 +1.2
1,211,585 - CCNA_01105 0.48 +1.2
1,211,585 - CCNA_01105 0.48 +2.2
1,211,585 - CCNA_01105 0.48 -1.7
1,211,585 - CCNA_01105 0.48 -1.1
1,211,585 - CCNA_01105 0.48 +2.2
1,211,585 - CCNA_01105 0.48 -1.6
1,211,587 + CCNA_01105 0.48 -1.6
1,211,650 - CCNA_01105 0.55 -1.9
1,211,669 + CCNA_01105 0.57 +0.1
1,211,681 + CCNA_01105 0.59 +0.3
1,211,700 + CCNA_01105 0.61 -1.5
1,211,700 + CCNA_01105 0.61 -0.8
1,211,715 + -1.1
1,211,718 - CCNA_01105 0.63 +1.7
1,211,718 - CCNA_01105 0.63 +2.2
1,211,723 - CCNA_01105 0.64 -2.1
1,211,723 - CCNA_01105 0.64 -2.0
1,211,760 - CCNA_01105 0.68 -0.3
1,211,760 - CCNA_01105 0.68 -2.3
1,211,762 + CCNA_01105 0.68 -0.3
1,211,795 - CCNA_01105 0.72 -0.9
1,211,797 + CCNA_01105 0.72 -1.7
1,211,804 + CCNA_01105 0.73 +0.9
1,211,805 - CCNA_01105 0.73 -2.5
1,211,805 - CCNA_01105 0.73 +1.2
1,211,805 - CCNA_01105 0.73 -0.8
1,211,811 - CCNA_01105 0.74 -1.3
1,211,836 + CCNA_01105 0.77 +1.2
1,211,836 + CCNA_01105 0.77 +1.3
1,211,836 + CCNA_01105 0.77 +0.2
1,211,836 + CCNA_01105 0.77 -0.4
1,211,873 + CCNA_01105 0.81 -1.7
1,211,892 - CCNA_01105 0.83 -1.6
1,211,917 + CCNA_01105 0.86 -0.4
1,211,925 - CCNA_01105 0.87 -1.9
1,211,930 - CCNA_01105 0.87 +0.8
1,211,940 - CCNA_01105 0.88 +0.2
1,211,956 + -0.4
1,211,966 + +0.1
1,211,979 + -1.8
1,211,988 + -0.8
1,211,988 + +0.2
1,211,996 - -0.3
1,211,996 - -0.8
1,212,101 + +1.2
1,212,126 + CCNA_01106 0.10 -0.0
1,212,126 + CCNA_01106 0.10 +0.2
1,212,126 + CCNA_01106 0.10 -0.7
1,212,126 + CCNA_01106 0.10 -0.0
1,212,126 + CCNA_01106 0.10 +2.5
1,212,134 - CCNA_01106 0.13 -3.1
1,212,155 + CCNA_01106 0.21 +1.0
1,212,172 + CCNA_01106 0.27 +0.4
1,212,182 + CCNA_01106 0.31 +1.9
1,212,182 + CCNA_01106 0.31 +1.2
1,212,182 + CCNA_01106 0.31 +0.6
1,212,182 + CCNA_01106 0.31 -0.3
1,212,182 + CCNA_01106 0.31 -1.9
1,212,182 + CCNA_01106 0.31 -1.4
1,212,182 + CCNA_01106 0.31 -1.4
1,212,182 + CCNA_01106 0.31 +0.4
1,212,190 - CCNA_01106 0.34 +0.4
1,212,190 - CCNA_01106 0.34 -1.8
1,212,190 - CCNA_01106 0.34 -0.6
1,212,190 - CCNA_01106 0.34 -2.2
1,212,190 - CCNA_01106 0.34 +0.3
1,212,190 - CCNA_01106 0.34 -0.7
1,212,190 - CCNA_01106 0.34 +3.2
1,212,190 - CCNA_01106 0.34 +0.6
1,212,256 + CCNA_01106 0.58 +1.2
1,212,256 + CCNA_01106 0.58 +0.3
1,212,264 - CCNA_01106 0.61 +0.2
1,212,264 - CCNA_01106 0.61 -2.2
1,212,264 - CCNA_01106 0.61 -0.8
1,212,269 - CCNA_01106 0.63 -0.1
1,212,276 + CCNA_01106 0.66 +1.1
1,212,279 - CCNA_01106 0.67 -0.6
1,212,284 - CCNA_01106 0.69 -1.4
1,212,323 + -1.7
1,212,342 - -1.6
1,212,358 + +0.2
1,212,405 + CCNA_01107 0.15 -1.5
1,212,413 - CCNA_01107 0.19 -1.8
1,212,422 + CCNA_01107 0.23 +0.0
1,212,422 + CCNA_01107 0.23 -2.6
1,212,422 + CCNA_01107 0.23 -2.3
1,212,422 + CCNA_01107 0.23 +0.6
1,212,422 + CCNA_01107 0.23 +0.6
1,212,422 + CCNA_01107 0.23 +2.2
1,212,427 + CCNA_01107 0.25 +0.5
1,212,430 - CCNA_01107 0.26 +0.3
1,212,430 - CCNA_01107 0.26 -0.6
1,212,432 + CCNA_01107 0.27 -1.0
1,212,437 + CCNA_01107 0.30 -0.5
1,212,451 - CCNA_01107 0.36 +0.6
1,212,451 - CCNA_01107 0.36 -1.2
1,212,451 - CCNA_01107 0.36 -1.9
1,212,474 + CCNA_01107 0.47 -1.0
1,212,487 + CCNA_01107 0.53 -0.2
1,212,528 - CCNA_01107 0.71 +1.2
1,212,529 - CCNA_01107 0.72 -0.8
1,212,587 - -1.3
1,212,590 + +0.2
1,212,591 + +1.1
1,212,591 + +0.4
1,212,602 + +2.2
1,212,616 + -0.9
1,212,618 - -2.2
1,212,647 + +0.1
1,212,655 - -2.0
1,212,662 + -1.4
1,212,683 - +1.2
1,212,701 - +1.4
1,212,732 - -0.0
1,212,760 + CCNA_01108 0.13 -1.0
1,212,760 + CCNA_01108 0.13 -1.2
1,212,760 + CCNA_01108 0.13 -2.0
1,212,768 - CCNA_01108 0.14 -2.6
1,212,768 - CCNA_01108 0.14 -0.8
1,212,817 - CCNA_01108 0.19 -2.6
1,212,856 - CCNA_01108 0.24 -0.5
1,212,858 + CCNA_01108 0.24 +2.2
1,212,869 + CCNA_01108 0.25 -1.2
1,212,905 - CCNA_01108 0.30 +0.9
1,212,999 + CCNA_01108 0.40 -3.3
1,213,003 + CCNA_01108 0.41 +0.1
1,213,007 - CCNA_01108 0.41 +2.2
1,213,020 + CCNA_01108 0.43 +2.2
1,213,038 - CCNA_01108 0.45 -1.1

Or see this region's nucleotide sequence