Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00358

Experiment: PYE 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00357 and CCNA_00358 are separated by 37 nucleotidesCCNA_00358 and CCNA_00359 are separated by 82 nucleotides CCNA_00357: CCNA_00357 - secretory tripeptidyl aminopeptidase, at 373,511 to 374,938 _00357 CCNA_00358: CCNA_00358 - delta 3,5-delta2,4-dienoyl-CoA isomerase precursor, at 374,976 to 375,836 _00358 CCNA_00359: CCNA_00359 - SH3 domain-containing cell surface protein, at 375,919 to 376,716 _00359 Position (kb) 374 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 373.996 kb on + strand, within CCNA_00357at 374.011 kb on - strand, within CCNA_00357at 374.012 kb on - strand, within CCNA_00357at 374.038 kb on + strand, within CCNA_00357at 374.057 kb on - strand, within CCNA_00357at 374.059 kb on + strand, within CCNA_00357at 374.066 kb on + strand, within CCNA_00357at 374.068 kb on + strand, within CCNA_00357at 374.116 kb on + strand, within CCNA_00357at 374.129 kb on + strand, within CCNA_00357at 374.143 kb on + strand, within CCNA_00357at 374.144 kb on + strand, within CCNA_00357at 374.162 kb on + strand, within CCNA_00357at 374.165 kb on + strand, within CCNA_00357at 374.173 kb on - strand, within CCNA_00357at 374.183 kb on - strand, within CCNA_00357at 374.194 kb on - strand, within CCNA_00357at 374.264 kb on + strand, within CCNA_00357at 374.281 kb on + strand, within CCNA_00357at 374.286 kb on + strand, within CCNA_00357at 374.354 kb on + strand, within CCNA_00357at 374.420 kb on + strand, within CCNA_00357at 374.420 kb on + strand, within CCNA_00357at 374.426 kb on - strand, within CCNA_00357at 374.452 kb on + strand, within CCNA_00357at 374.480 kb on + strand, within CCNA_00357at 374.502 kb on - strandat 374.507 kb on + strand, within CCNA_00357at 374.507 kb on + strand, within CCNA_00357at 374.512 kb on + strand, within CCNA_00357at 374.515 kb on - strand, within CCNA_00357at 374.576 kb on + strand, within CCNA_00357at 374.584 kb on - strand, within CCNA_00357at 374.607 kb on - strand, within CCNA_00357at 374.618 kb on - strand, within CCNA_00357at 374.633 kb on - strand, within CCNA_00357at 374.683 kb on + strand, within CCNA_00357at 374.705 kb on - strand, within CCNA_00357at 374.829 kb on + strandat 374.872 kb on + strandat 374.942 kb on + strandat 374.969 kb on - strandat 374.971 kb on - strandat 375.002 kb on + strandat 375.002 kb on + strandat 375.007 kb on + strandat 375.007 kb on + strandat 375.010 kb on - strandat 375.010 kb on - strandat 375.032 kb on - strandat 375.032 kb on - strandat 375.055 kb on - strandat 375.059 kb on - strandat 375.069 kb on + strand, within CCNA_00358at 375.091 kb on + strand, within CCNA_00358at 375.094 kb on + strand, within CCNA_00358at 375.210 kb on + strand, within CCNA_00358at 375.239 kb on - strand, within CCNA_00358at 375.249 kb on - strand, within CCNA_00358at 375.280 kb on - strand, within CCNA_00358at 375.281 kb on - strand, within CCNA_00358at 375.287 kb on + strand, within CCNA_00358at 375.292 kb on + strand, within CCNA_00358at 375.300 kb on - strand, within CCNA_00358at 375.300 kb on - strand, within CCNA_00358at 375.305 kb on - strand, within CCNA_00358at 375.338 kb on + strand, within CCNA_00358at 375.373 kb on + strand, within CCNA_00358at 375.381 kb on - strand, within CCNA_00358at 375.508 kb on + strand, within CCNA_00358at 375.517 kb on - strand, within CCNA_00358at 375.518 kb on - strand, within CCNA_00358at 375.518 kb on - strand, within CCNA_00358at 375.597 kb on - strand, within CCNA_00358at 375.614 kb on - strand, within CCNA_00358at 375.628 kb on - strand, within CCNA_00358at 375.731 kb on + strand, within CCNA_00358at 375.739 kb on - strand, within CCNA_00358at 375.739 kb on - strand, within CCNA_00358at 375.741 kb on + strand, within CCNA_00358at 375.741 kb on + strand, within CCNA_00358at 375.741 kb on + strand, within CCNA_00358at 375.741 kb on + strand, within CCNA_00358at 375.771 kb on - strandat 375.792 kb on - strandat 375.807 kb on + strandat 375.807 kb on + strandat 375.807 kb on + strandat 375.807 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.845 kb on + strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.853 kb on - strandat 375.855 kb on - strandat 375.885 kb on + strandat 375.890 kb on + strandat 375.899 kb on - strandat 375.946 kb on + strandat 375.954 kb on - strandat 375.977 kb on + strandat 376.003 kb on - strand, within CCNA_00359at 376.005 kb on + strand, within CCNA_00359at 376.008 kb on - strand, within CCNA_00359at 376.083 kb on - strand, within CCNA_00359at 376.104 kb on + strand, within CCNA_00359at 376.110 kb on - strand, within CCNA_00359at 376.112 kb on - strand, within CCNA_00359at 376.124 kb on + strand, within CCNA_00359at 376.127 kb on - strand, within CCNA_00359at 376.134 kb on + strand, within CCNA_00359at 376.149 kb on + strand, within CCNA_00359at 376.209 kb on - strand, within CCNA_00359at 376.224 kb on - strand, within CCNA_00359at 376.228 kb on - strand, within CCNA_00359at 376.266 kb on + strand, within CCNA_00359at 376.267 kb on + strand, within CCNA_00359at 376.269 kb on - strand, within CCNA_00359at 376.274 kb on - strand, within CCNA_00359at 376.307 kb on + strand, within CCNA_00359at 376.312 kb on + strand, within CCNA_00359at 376.330 kb on - strand, within CCNA_00359at 376.360 kb on + strand, within CCNA_00359at 376.361 kb on + strand, within CCNA_00359at 376.385 kb on + strand, within CCNA_00359at 376.397 kb on + strand, within CCNA_00359at 376.412 kb on - strand, within CCNA_00359at 376.499 kb on + strand, within CCNA_00359at 376.547 kb on + strand, within CCNA_00359at 376.608 kb on + strand, within CCNA_00359at 376.630 kb on + strand, within CCNA_00359at 376.670 kb on - strandat 376.705 kb on + strandat 376.718 kb on - strandat 376.719 kb on - strandat 376.744 kb on + strandat 376.757 kb on - strandat 376.760 kb on - strandat 376.762 kb on - strandat 376.810 kb on + strandat 376.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep1 58 days
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373,996 + CCNA_00357 0.34 +0.2
374,011 - CCNA_00357 0.35 +3.3
374,012 - CCNA_00357 0.35 -3.1
374,038 + CCNA_00357 0.37 -3.2
374,057 - CCNA_00357 0.38 +0.2
374,059 + CCNA_00357 0.38 +1.4
374,066 + CCNA_00357 0.39 +0.3
374,068 + CCNA_00357 0.39 -0.1
374,116 + CCNA_00357 0.42 -0.2
374,129 + CCNA_00357 0.43 -0.8
374,143 + CCNA_00357 0.44 -0.0
374,144 + CCNA_00357 0.44 +0.4
374,162 + CCNA_00357 0.46 -1.0
374,165 + CCNA_00357 0.46 -0.7
374,173 - CCNA_00357 0.46 +0.1
374,183 - CCNA_00357 0.47 +0.0
374,194 - CCNA_00357 0.48 +0.4
374,264 + CCNA_00357 0.53 -0.4
374,281 + CCNA_00357 0.54 +0.2
374,286 + CCNA_00357 0.54 -0.3
374,354 + CCNA_00357 0.59 +1.2
374,420 + CCNA_00357 0.64 +0.4
374,420 + CCNA_00357 0.64 +0.2
374,426 - CCNA_00357 0.64 -1.5
374,452 + CCNA_00357 0.66 +0.1
374,480 + CCNA_00357 0.68 -1.6
374,502 - -1.4
374,507 + CCNA_00357 0.70 +0.2
374,507 + CCNA_00357 0.70 +0.5
374,512 + CCNA_00357 0.70 -1.4
374,515 - CCNA_00357 0.70 -2.1
374,576 + CCNA_00357 0.75 -1.3
374,584 - CCNA_00357 0.75 -2.6
374,607 - CCNA_00357 0.77 -2.4
374,618 - CCNA_00357 0.78 +0.8
374,633 - CCNA_00357 0.79 -1.1
374,683 + CCNA_00357 0.82 +0.9
374,705 - CCNA_00357 0.84 -0.5
374,829 + -0.4
374,872 + +0.7
374,942 + +0.0
374,969 - +0.1
374,971 - +0.6
375,002 + +0.1
375,002 + +1.3
375,007 + -0.3
375,007 + +0.1
375,010 - +0.5
375,010 - +1.4
375,032 - +0.1
375,032 - +1.4
375,055 - +0.0
375,059 - +1.5
375,069 + CCNA_00358 0.11 +0.4
375,091 + CCNA_00358 0.13 +0.5
375,094 + CCNA_00358 0.14 +0.6
375,210 + CCNA_00358 0.27 -1.0
375,239 - CCNA_00358 0.31 -0.8
375,249 - CCNA_00358 0.32 +1.3
375,280 - CCNA_00358 0.35 -1.3
375,281 - CCNA_00358 0.35 +0.7
375,287 + CCNA_00358 0.36 +0.1
375,292 + CCNA_00358 0.37 +0.2
375,300 - CCNA_00358 0.38 -0.4
375,300 - CCNA_00358 0.38 -0.8
375,305 - CCNA_00358 0.38 +1.9
375,338 + CCNA_00358 0.42 +0.5
375,373 + CCNA_00358 0.46 -1.6
375,381 - CCNA_00358 0.47 -0.4
375,508 + CCNA_00358 0.62 +0.4
375,517 - CCNA_00358 0.63 -1.0
375,518 - CCNA_00358 0.63 -0.2
375,518 - CCNA_00358 0.63 +0.1
375,597 - CCNA_00358 0.72 -1.0
375,614 - CCNA_00358 0.74 -1.6
375,628 - CCNA_00358 0.76 -0.3
375,731 + CCNA_00358 0.88 -0.5
375,739 - CCNA_00358 0.89 -1.1
375,739 - CCNA_00358 0.89 +0.2
375,741 + CCNA_00358 0.89 -1.4
375,741 + CCNA_00358 0.89 +0.5
375,741 + CCNA_00358 0.89 -0.8
375,741 + CCNA_00358 0.89 +0.1
375,771 - +1.8
375,792 - -2.5
375,807 + +0.6
375,807 + +0.1
375,807 + -1.5
375,807 + -1.7
375,845 + -1.5
375,845 + -0.6
375,845 + +0.8
375,845 + +0.6
375,845 + +0.4
375,845 + -1.8
375,845 + +0.6
375,845 + +0.5
375,845 + -1.6
375,845 + -1.1
375,845 + -2.0
375,845 + +0.7
375,845 + -2.0
375,845 + -0.8
375,845 + +0.8
375,853 - +1.8
375,853 - -0.3
375,853 - -1.0
375,853 - +1.8
375,853 - -3.6
375,853 - +0.2
375,853 - -0.8
375,853 - -0.4
375,853 - +1.0
375,853 - -0.5
375,853 - -2.0
375,853 - -3.7
375,853 - -3.6
375,853 - +0.9
375,853 - -1.5
375,855 - -2.0
375,885 + +0.2
375,890 + +0.6
375,899 - -1.8
375,946 + +0.6
375,954 - -2.4
375,977 + +3.4
376,003 - CCNA_00359 0.11 -2.4
376,005 + CCNA_00359 0.11 +0.5
376,008 - CCNA_00359 0.11 -0.8
376,083 - CCNA_00359 0.21 +0.0
376,104 + CCNA_00359 0.23 -0.0
376,110 - CCNA_00359 0.24 +0.5
376,112 - CCNA_00359 0.24 -0.0
376,124 + CCNA_00359 0.26 -0.9
376,127 - CCNA_00359 0.26 -0.8
376,134 + CCNA_00359 0.27 -0.4
376,149 + CCNA_00359 0.29 +0.0
376,209 - CCNA_00359 0.36 -0.4
376,224 - CCNA_00359 0.38 +0.6
376,228 - CCNA_00359 0.39 +1.2
376,266 + CCNA_00359 0.43 -0.9
376,267 + CCNA_00359 0.44 +0.5
376,269 - CCNA_00359 0.44 +0.2
376,274 - CCNA_00359 0.44 -0.6
376,307 + CCNA_00359 0.49 -0.5
376,312 + CCNA_00359 0.49 +1.6
376,330 - CCNA_00359 0.52 -0.3
376,360 + CCNA_00359 0.55 +0.8
376,361 + CCNA_00359 0.55 +0.3
376,385 + CCNA_00359 0.58 -0.7
376,397 + CCNA_00359 0.60 +1.9
376,412 - CCNA_00359 0.62 -0.0
376,499 + CCNA_00359 0.73 -0.3
376,547 + CCNA_00359 0.79 -0.0
376,608 + CCNA_00359 0.86 -1.2
376,630 + CCNA_00359 0.89 +1.1
376,670 - -0.3
376,705 + +0.3
376,718 - +0.4
376,719 - -0.1
376,744 + -0.1
376,757 - +0.8
376,760 - +0.5
376,762 - -0.7
376,810 + +0.4
376,811 + +1.3

Or see this region's nucleotide sequence