Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00287

Experiment: PYE 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00285 and CCNA_00286 are separated by 192 nucleotidesCCNA_00286 and CCNA_00287 are separated by 18 nucleotidesCCNA_00287 and CCNA_00288 are separated by 166 nucleotides CCNA_00285: CCNA_00285 - acetylglutamate kinase, at 296,628 to 297,542 _00285 CCNA_00286: CCNA_00286 - two-component receiver domain protein LovR, at 297,735 to 298,193 _00286 CCNA_00287: CCNA_00287 - photosensory histidine protein kinase LovK, at 298,212 to 299,318 _00287 CCNA_00288: CCNA_00288 - ABC-type sulfate transport system, periplasmic component, at 299,485 to 300,534 _00288 Position (kb) 298 299 300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 297.617 kb on + strandat 297.619 kb on + strandat 297.635 kb on - strandat 297.682 kb on - strandat 297.746 kb on - strandat 297.765 kb on - strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.779 kb on + strandat 297.806 kb on + strand, within CCNA_00286at 297.846 kb on + strandat 297.854 kb on - strand, within CCNA_00286at 297.854 kb on - strand, within CCNA_00286at 297.869 kb on + strand, within CCNA_00286at 297.874 kb on + strand, within CCNA_00286at 297.877 kb on - strand, within CCNA_00286at 297.877 kb on - strand, within CCNA_00286at 297.882 kb on - strand, within CCNA_00286at 297.882 kb on - strand, within CCNA_00286at 297.893 kb on + strand, within CCNA_00286at 297.914 kb on - strand, within CCNA_00286at 297.927 kb on - strand, within CCNA_00286at 297.933 kb on - strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.961 kb on + strand, within CCNA_00286at 297.984 kb on + strand, within CCNA_00286at 297.992 kb on - strand, within CCNA_00286at 297.997 kb on + strand, within CCNA_00286at 297.997 kb on - strand, within CCNA_00286at 297.999 kb on + strand, within CCNA_00286at 298.045 kb on - strand, within CCNA_00286at 298.081 kb on - strand, within CCNA_00286at 298.114 kb on + strand, within CCNA_00286at 298.119 kb on + strand, within CCNA_00286at 298.188 kb on + strandat 298.222 kb on + strandat 298.259 kb on - strandat 298.292 kb on + strandat 298.345 kb on + strand, within CCNA_00287at 298.353 kb on - strand, within CCNA_00287at 298.353 kb on - strand, within CCNA_00287at 298.355 kb on + strand, within CCNA_00287at 298.358 kb on - strand, within CCNA_00287at 298.358 kb on - strand, within CCNA_00287at 298.395 kb on + strand, within CCNA_00287at 298.459 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.495 kb on + strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.538 kb on + strand, within CCNA_00287at 298.562 kb on + strand, within CCNA_00287at 298.585 kb on + strand, within CCNA_00287at 298.596 kb on + strand, within CCNA_00287at 298.620 kb on - strand, within CCNA_00287at 298.633 kb on + strand, within CCNA_00287at 298.674 kb on - strand, within CCNA_00287at 298.674 kb on - strand, within CCNA_00287at 298.677 kb on + strand, within CCNA_00287at 298.677 kb on + strand, within CCNA_00287at 298.690 kb on - strand, within CCNA_00287at 298.695 kb on - strand, within CCNA_00287at 298.720 kb on - strand, within CCNA_00287at 298.723 kb on + strand, within CCNA_00287at 298.723 kb on + strand, within CCNA_00287at 298.753 kb on - strand, within CCNA_00287at 298.755 kb on - strand, within CCNA_00287at 298.787 kb on - strand, within CCNA_00287at 298.787 kb on - strand, within CCNA_00287at 298.824 kb on + strand, within CCNA_00287at 298.827 kb on - strand, within CCNA_00287at 298.829 kb on + strand, within CCNA_00287at 298.832 kb on + strandat 298.832 kb on + strand, within CCNA_00287at 298.854 kb on + strand, within CCNA_00287at 298.856 kb on + strand, within CCNA_00287at 298.862 kb on - strand, within CCNA_00287at 298.870 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.082 kb on - strand, within CCNA_00287at 299.082 kb on - strand, within CCNA_00287at 299.082 kb on - strand, within CCNA_00287at 299.128 kb on - strand, within CCNA_00287at 299.144 kb on - strand, within CCNA_00287at 299.150 kb on + strand, within CCNA_00287at 299.164 kb on - strand, within CCNA_00287at 299.211 kb on + strandat 299.211 kb on + strandat 299.220 kb on - strandat 299.240 kb on - strandat 299.263 kb on - strandat 299.267 kb on + strandat 299.321 kb on - strandat 299.325 kb on + strandat 299.327 kb on - strandat 299.356 kb on - strandat 299.421 kb on - strandat 299.478 kb on - strandat 299.479 kb on - strandat 299.506 kb on + strandat 299.522 kb on + strandat 299.536 kb on + strandat 299.539 kb on - strandat 299.556 kb on + strandat 299.556 kb on + strandat 299.556 kb on + strandat 299.564 kb on - strandat 299.580 kb on + strandat 299.591 kb on + strand, within CCNA_00288at 299.592 kb on + strand, within CCNA_00288at 299.599 kb on - strand, within CCNA_00288at 299.620 kb on + strand, within CCNA_00288at 299.627 kb on + strand, within CCNA_00288at 299.628 kb on - strand, within CCNA_00288at 299.647 kb on - strand, within CCNA_00288at 299.654 kb on + strand, within CCNA_00288at 299.654 kb on + strand, within CCNA_00288at 299.689 kb on + strand, within CCNA_00288at 299.693 kb on + strand, within CCNA_00288at 299.697 kb on - strand, within CCNA_00288at 299.698 kb on + strand, within CCNA_00288at 299.698 kb on + strand, within CCNA_00288at 299.706 kb on - strand, within CCNA_00288at 299.754 kb on - strand, within CCNA_00288at 299.783 kb on + strand, within CCNA_00288at 299.786 kb on - strand, within CCNA_00288at 299.792 kb on + strand, within CCNA_00288at 299.810 kb on - strand, within CCNA_00288at 299.848 kb on + strand, within CCNA_00288at 299.874 kb on + strand, within CCNA_00288at 299.882 kb on - strand, within CCNA_00288at 299.908 kb on + strand, within CCNA_00288at 299.908 kb on + strand, within CCNA_00288at 299.924 kb on + strand, within CCNA_00288at 299.924 kb on + strand, within CCNA_00288at 299.932 kb on - strand, within CCNA_00288at 299.948 kb on + strand, within CCNA_00288at 299.948 kb on + strand, within CCNA_00288at 299.955 kb on - strand, within CCNA_00288at 299.962 kb on - strand, within CCNA_00288at 299.987 kb on + strand, within CCNA_00288at 300.047 kb on - strand, within CCNA_00288at 300.080 kb on + strand, within CCNA_00288at 300.080 kb on + strand, within CCNA_00288at 300.125 kb on - strand, within CCNA_00288at 300.136 kb on + strand, within CCNA_00288at 300.152 kb on - strand, within CCNA_00288at 300.188 kb on + strand, within CCNA_00288at 300.243 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.303 kb on + strand, within CCNA_00288

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep1 58 days
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297,617 + +3.1
297,619 + -0.4
297,635 - -0.5
297,682 - -1.8
297,746 - +0.1
297,765 - +1.4
297,769 + -1.6
297,769 + -1.2
297,769 + +0.8
297,769 + -2.4
297,769 + -2.0
297,769 + +1.8
297,769 + -0.3
297,777 - -2.1
297,777 - -0.7
297,777 - -1.2
297,777 - -0.7
297,777 - +4.3
297,777 - -1.1
297,779 + +1.8
297,806 + CCNA_00286 0.15 -1.5
297,846 + -0.4
297,854 - CCNA_00286 0.26 -0.3
297,854 - CCNA_00286 0.26 -1.5
297,869 + CCNA_00286 0.29 +0.5
297,874 + CCNA_00286 0.30 -1.4
297,877 - CCNA_00286 0.31 -0.8
297,877 - CCNA_00286 0.31 -0.4
297,882 - CCNA_00286 0.32 +0.8
297,882 - CCNA_00286 0.32 -3.5
297,893 + CCNA_00286 0.34 +0.3
297,914 - CCNA_00286 0.39 +0.5
297,927 - CCNA_00286 0.42 +0.2
297,933 - CCNA_00286 0.43 -0.8
297,940 + CCNA_00286 0.45 -0.1
297,940 + CCNA_00286 0.45 +1.4
297,940 + CCNA_00286 0.45 +0.3
297,940 + CCNA_00286 0.45 +1.0
297,940 + CCNA_00286 0.45 +0.5
297,940 + CCNA_00286 0.45 +1.4
297,940 + CCNA_00286 0.45 +0.2
297,948 - CCNA_00286 0.46 +0.4
297,948 - CCNA_00286 0.46 -4.0
297,948 - CCNA_00286 0.46 -1.1
297,948 - CCNA_00286 0.46 -0.2
297,948 - CCNA_00286 0.46 +0.2
297,948 - CCNA_00286 0.46 -0.6
297,948 - CCNA_00286 0.46 -0.4
297,948 - CCNA_00286 0.46 -1.9
297,961 + CCNA_00286 0.49 +1.8
297,984 + CCNA_00286 0.54 -0.6
297,992 - CCNA_00286 0.56 -2.9
297,997 + CCNA_00286 0.57 -1.4
297,997 - CCNA_00286 0.57 +1.9
297,999 + CCNA_00286 0.58 -1.6
298,045 - CCNA_00286 0.68 -0.3
298,081 - CCNA_00286 0.75 +0.4
298,114 + CCNA_00286 0.83 -2.5
298,119 + CCNA_00286 0.84 -0.9
298,188 + -2.0
298,222 + +0.6
298,259 - +0.4
298,292 + -2.4
298,345 + CCNA_00287 0.12 -2.8
298,353 - CCNA_00287 0.13 -0.7
298,353 - CCNA_00287 0.13 -0.8
298,355 + CCNA_00287 0.13 -2.2
298,358 - CCNA_00287 0.13 +0.0
298,358 - CCNA_00287 0.13 +0.4
298,395 + CCNA_00287 0.17 -0.2
298,459 + CCNA_00287 0.22 -2.5
298,488 + CCNA_00287 0.25 -0.9
298,488 + CCNA_00287 0.25 -1.0
298,488 + CCNA_00287 0.25 +0.1
298,488 + CCNA_00287 0.25 -0.9
298,488 + CCNA_00287 0.25 -0.3
298,488 + CCNA_00287 0.25 -2.6
298,488 + CCNA_00287 0.25 -1.3
298,495 + CCNA_00287 0.26 -0.2
298,496 - CCNA_00287 0.26 -0.0
298,496 - CCNA_00287 0.26 -0.2
298,496 - CCNA_00287 0.26 -0.4
298,538 + CCNA_00287 0.29 -1.4
298,562 + CCNA_00287 0.32 +1.8
298,585 + CCNA_00287 0.34 -1.5
298,596 + CCNA_00287 0.35 +0.1
298,620 - CCNA_00287 0.37 -1.4
298,633 + CCNA_00287 0.38 -0.2
298,674 - CCNA_00287 0.42 -1.0
298,674 - CCNA_00287 0.42 +1.3
298,677 + CCNA_00287 0.42 -0.2
298,677 + CCNA_00287 0.42 +0.2
298,690 - CCNA_00287 0.43 +0.4
298,695 - CCNA_00287 0.44 -0.1
298,720 - CCNA_00287 0.46 -0.9
298,723 + CCNA_00287 0.46 +0.2
298,723 + CCNA_00287 0.46 -2.4
298,753 - CCNA_00287 0.49 -1.0
298,755 - CCNA_00287 0.49 -1.8
298,787 - CCNA_00287 0.52 -0.5
298,787 - CCNA_00287 0.52 +0.8
298,824 + CCNA_00287 0.55 -2.0
298,827 - CCNA_00287 0.56 +0.8
298,829 + CCNA_00287 0.56 -0.8
298,832 + +1.8
298,832 + CCNA_00287 0.56 -2.0
298,854 + CCNA_00287 0.58 -3.4
298,856 + CCNA_00287 0.58 -1.3
298,862 - CCNA_00287 0.59 -3.1
298,870 + CCNA_00287 0.59 -0.9
299,074 + CCNA_00287 0.78 -2.5
299,074 + CCNA_00287 0.78 -0.8
299,074 + CCNA_00287 0.78 -1.6
299,074 + CCNA_00287 0.78 -1.6
299,074 + CCNA_00287 0.78 -0.7
299,074 + CCNA_00287 0.78 -1.1
299,082 - CCNA_00287 0.79 +0.3
299,082 - CCNA_00287 0.79 -1.4
299,082 - CCNA_00287 0.79 +0.8
299,128 - CCNA_00287 0.83 -0.7
299,144 - CCNA_00287 0.84 +1.0
299,150 + CCNA_00287 0.85 +0.2
299,164 - CCNA_00287 0.86 -0.6
299,211 + -1.6
299,211 + -1.0
299,220 - -0.6
299,240 - -0.7
299,263 - -1.0
299,267 + -1.4
299,321 - -0.8
299,325 + -0.1
299,327 - -0.0
299,356 - -1.2
299,421 - +0.5
299,478 - +0.4
299,479 - +0.7
299,506 + +3.4
299,522 + -2.1
299,536 + -1.1
299,539 - -0.5
299,556 + +2.4
299,556 + +0.0
299,556 + +2.2
299,564 - +2.5
299,580 + -0.8
299,591 + CCNA_00288 0.10 -1.1
299,592 + CCNA_00288 0.10 -1.1
299,599 - CCNA_00288 0.11 -0.3
299,620 + CCNA_00288 0.13 -1.8
299,627 + CCNA_00288 0.14 -2.3
299,628 - CCNA_00288 0.14 +1.4
299,647 - CCNA_00288 0.15 -0.1
299,654 + CCNA_00288 0.16 -0.8
299,654 + CCNA_00288 0.16 -0.5
299,689 + CCNA_00288 0.19 -1.4
299,693 + CCNA_00288 0.20 -0.1
299,697 - CCNA_00288 0.20 -1.5
299,698 + CCNA_00288 0.20 -0.2
299,698 + CCNA_00288 0.20 -2.4
299,706 - CCNA_00288 0.21 -0.3
299,754 - CCNA_00288 0.26 -0.5
299,783 + CCNA_00288 0.28 -1.0
299,786 - CCNA_00288 0.29 +1.3
299,792 + CCNA_00288 0.29 +0.4
299,810 - CCNA_00288 0.31 +0.9
299,848 + CCNA_00288 0.35 -0.2
299,874 + CCNA_00288 0.37 -0.0
299,882 - CCNA_00288 0.38 +0.5
299,908 + CCNA_00288 0.40 -0.5
299,908 + CCNA_00288 0.40 +0.6
299,924 + CCNA_00288 0.42 -0.8
299,924 + CCNA_00288 0.42 +1.8
299,932 - CCNA_00288 0.43 -3.3
299,948 + CCNA_00288 0.44 -1.0
299,948 + CCNA_00288 0.44 -1.5
299,955 - CCNA_00288 0.45 -0.1
299,962 - CCNA_00288 0.45 +0.6
299,987 + CCNA_00288 0.48 -2.3
300,047 - CCNA_00288 0.54 +0.1
300,080 + CCNA_00288 0.57 +0.3
300,080 + CCNA_00288 0.57 -0.9
300,125 - CCNA_00288 0.61 -2.0
300,136 + CCNA_00288 0.62 -1.0
300,152 - CCNA_00288 0.64 -1.0
300,188 + CCNA_00288 0.67 -0.2
300,243 - CCNA_00288 0.72 -1.5
300,267 - CCNA_00288 0.74 +0.5
300,267 - CCNA_00288 0.74 -1.1
300,267 - CCNA_00288 0.74 +0.2
300,267 - CCNA_00288 0.74 +0.8
300,303 + CCNA_00288 0.78 +1.8

Or see this region's nucleotide sequence