Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00277

Experiment: PYE 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00275 and CCNA_00276 are separated by 89 nucleotidesCCNA_00276 and CCNA_00277 are separated by 64 nucleotidesCCNA_00277 and CCNA_00278 are separated by 17 nucleotidesCCNA_00278 and CCNA_00279 are separated by 51 nucleotides CCNA_00275: CCNA_00275 - transposase, DDE family, at 288,082 to 289,527 _00275 CCNA_00276: CCNA_00276 - hypothetical protein, at 289,617 to 290,096 _00276 CCNA_00277: CCNA_00277 - succinyl-diaminopimelate desuccinylase, at 290,161 to 291,321 _00277 CCNA_00278: CCNA_00278 - glutaminase, at 291,339 to 292,259 _00278 CCNA_00279: CCNA_00279 - NAD(P)H-quinone reductase, at 292,311 to 292,901 _00279 Position (kb) 290 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 289.540 kb on + strandat 289.585 kb on + strandat 289.585 kb on + strandat 289.585 kb on + strandat 289.585 kb on + strandat 289.593 kb on - strandat 289.593 kb on - strandat 289.593 kb on - strandat 289.593 kb on - strandat 289.594 kb on - strandat 289.629 kb on + strandat 289.639 kb on + strandat 289.659 kb on - strandat 289.666 kb on - strand, within CCNA_00276at 289.675 kb on - strand, within CCNA_00276at 289.699 kb on - strand, within CCNA_00276at 289.720 kb on - strand, within CCNA_00276at 289.720 kb on - strand, within CCNA_00276at 289.722 kb on + strand, within CCNA_00276at 289.768 kb on - strand, within CCNA_00276at 289.787 kb on - strand, within CCNA_00276at 289.798 kb on + strand, within CCNA_00276at 289.818 kb on - strand, within CCNA_00276at 289.818 kb on - strand, within CCNA_00276at 289.858 kb on + strand, within CCNA_00276at 289.887 kb on - strand, within CCNA_00276at 289.888 kb on + strand, within CCNA_00276at 289.936 kb on - strand, within CCNA_00276at 289.936 kb on - strand, within CCNA_00276at 289.976 kb on + strand, within CCNA_00276at 289.984 kb on - strand, within CCNA_00276at 290.000 kb on + strand, within CCNA_00276at 290.000 kb on + strand, within CCNA_00276at 290.008 kb on - strand, within CCNA_00276at 290.030 kb on + strand, within CCNA_00276at 290.033 kb on - strand, within CCNA_00276at 290.039 kb on + strand, within CCNA_00276at 290.039 kb on + strand, within CCNA_00276at 290.044 kb on + strand, within CCNA_00276at 290.047 kb on - strand, within CCNA_00276at 290.047 kb on - strand, within CCNA_00276at 290.052 kb on - strandat 290.072 kb on - strandat 290.081 kb on + strandat 290.099 kb on - strandat 290.145 kb on + strandat 290.145 kb on + strandat 290.171 kb on - strandat 291.302 kb on + strandat 291.310 kb on + strandat 291.310 kb on + strandat 291.315 kb on + strandat 291.315 kb on + strandat 291.315 kb on + strandat 291.323 kb on - strandat 291.323 kb on - strandat 291.345 kb on - strandat 291.376 kb on - strandat 291.376 kb on - strandat 291.389 kb on - strandat 291.415 kb on - strandat 291.468 kb on + strand, within CCNA_00278at 291.506 kb on - strand, within CCNA_00278at 291.513 kb on + strand, within CCNA_00278at 291.513 kb on + strand, within CCNA_00278at 291.538 kb on + strand, within CCNA_00278at 291.546 kb on - strand, within CCNA_00278at 291.552 kb on + strand, within CCNA_00278at 291.553 kb on + strand, within CCNA_00278at 291.553 kb on - strand, within CCNA_00278at 291.572 kb on - strand, within CCNA_00278at 291.572 kb on - strand, within CCNA_00278at 291.588 kb on + strand, within CCNA_00278at 291.619 kb on - strand, within CCNA_00278at 291.644 kb on + strand, within CCNA_00278at 291.657 kb on - strand, within CCNA_00278at 291.755 kb on - strand, within CCNA_00278at 291.767 kb on + strand, within CCNA_00278at 291.808 kb on + strand, within CCNA_00278at 291.816 kb on - strand, within CCNA_00278at 291.816 kb on - strand, within CCNA_00278at 291.871 kb on + strand, within CCNA_00278at 291.915 kb on - strand, within CCNA_00278at 291.922 kb on - strand, within CCNA_00278at 291.926 kb on + strand, within CCNA_00278at 291.987 kb on - strand, within CCNA_00278at 292.006 kb on - strand, within CCNA_00278at 292.017 kb on + strand, within CCNA_00278at 292.044 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.067 kb on - strand, within CCNA_00278at 292.069 kb on + strand, within CCNA_00278at 292.095 kb on + strand, within CCNA_00278at 292.109 kb on + strand, within CCNA_00278at 292.126 kb on - strand, within CCNA_00278at 292.129 kb on + strand, within CCNA_00278at 292.145 kb on + strand, within CCNA_00278at 292.259 kb on - strandat 292.264 kb on + strandat 292.269 kb on + strandat 292.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep1 58 days
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289,540 + -2.2
289,585 + -2.0
289,585 + -0.8
289,585 + +0.3
289,585 + -1.0
289,593 - -0.1
289,593 - -0.5
289,593 - -1.5
289,593 - -2.2
289,594 - -2.7
289,629 + +1.8
289,639 + +1.8
289,659 - -1.0
289,666 - CCNA_00276 0.10 +0.3
289,675 - CCNA_00276 0.12 -1.1
289,699 - CCNA_00276 0.17 -1.3
289,720 - CCNA_00276 0.21 -0.7
289,720 - CCNA_00276 0.21 -0.9
289,722 + CCNA_00276 0.22 -2.3
289,768 - CCNA_00276 0.31 -0.6
289,787 - CCNA_00276 0.35 +0.5
289,798 + CCNA_00276 0.38 -1.9
289,818 - CCNA_00276 0.42 -1.3
289,818 - CCNA_00276 0.42 -1.5
289,858 + CCNA_00276 0.50 -0.7
289,887 - CCNA_00276 0.56 +0.5
289,888 + CCNA_00276 0.56 -1.0
289,936 - CCNA_00276 0.66 -1.2
289,936 - CCNA_00276 0.66 -0.9
289,976 + CCNA_00276 0.75 +0.1
289,984 - CCNA_00276 0.76 -2.2
290,000 + CCNA_00276 0.80 -0.2
290,000 + CCNA_00276 0.80 +0.3
290,008 - CCNA_00276 0.81 +1.7
290,030 + CCNA_00276 0.86 -0.3
290,033 - CCNA_00276 0.87 -0.3
290,039 + CCNA_00276 0.88 -0.8
290,039 + CCNA_00276 0.88 +2.8
290,044 + CCNA_00276 0.89 -1.9
290,047 - CCNA_00276 0.90 -0.1
290,047 - CCNA_00276 0.90 -1.2
290,052 - -1.0
290,072 - -0.5
290,081 + +0.0
290,099 - +1.8
290,145 + -1.1
290,145 + -0.3
290,171 - -3.2
291,302 + -0.6
291,310 + +0.7
291,310 + -0.2
291,315 + +0.6
291,315 + -0.0
291,315 + -0.2
291,323 - -1.0
291,323 - -0.7
291,345 - -0.5
291,376 - -1.1
291,376 - +1.9
291,389 - -1.3
291,415 - -1.8
291,468 + CCNA_00278 0.14 -0.0
291,506 - CCNA_00278 0.18 +1.2
291,513 + CCNA_00278 0.19 +1.0
291,513 + CCNA_00278 0.19 +1.9
291,538 + CCNA_00278 0.22 +1.1
291,546 - CCNA_00278 0.22 +0.3
291,552 + CCNA_00278 0.23 +0.2
291,553 + CCNA_00278 0.23 +1.5
291,553 - CCNA_00278 0.23 -2.0
291,572 - CCNA_00278 0.25 -2.5
291,572 - CCNA_00278 0.25 -0.1
291,588 + CCNA_00278 0.27 -0.8
291,619 - CCNA_00278 0.30 +0.0
291,644 + CCNA_00278 0.33 +0.8
291,657 - CCNA_00278 0.35 -0.7
291,755 - CCNA_00278 0.45 +1.9
291,767 + CCNA_00278 0.46 -1.3
291,808 + CCNA_00278 0.51 +0.7
291,816 - CCNA_00278 0.52 +0.2
291,816 - CCNA_00278 0.52 -0.8
291,871 + CCNA_00278 0.58 -0.3
291,915 - CCNA_00278 0.63 -2.0
291,922 - CCNA_00278 0.63 -0.6
291,926 + CCNA_00278 0.64 -0.4
291,987 - CCNA_00278 0.70 -2.1
292,006 - CCNA_00278 0.72 -2.3
292,017 + CCNA_00278 0.74 -0.3
292,044 + CCNA_00278 0.77 -0.3
292,059 + CCNA_00278 0.78 -0.8
292,059 + CCNA_00278 0.78 +1.6
292,059 + CCNA_00278 0.78 -0.7
292,059 + CCNA_00278 0.78 -0.0
292,067 - CCNA_00278 0.79 -3.0
292,069 + CCNA_00278 0.79 -0.7
292,095 + CCNA_00278 0.82 -2.1
292,109 + CCNA_00278 0.84 +1.0
292,126 - CCNA_00278 0.85 -0.1
292,129 + CCNA_00278 0.86 -2.8
292,145 + CCNA_00278 0.88 -0.7
292,259 - +1.6
292,264 + -0.1
292,269 + +0.0
292,298 - -1.2

Or see this region's nucleotide sequence