Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00255

Experiment: PYE 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00254 and CCNA_00255 overlap by 4 nucleotidesCCNA_00255 and CCNA_00256 are separated by 18 nucleotidesCCNA_00256 and CCNA_00257 are separated by 118 nucleotides CCNA_00254: CCNA_00254 - RarD family membrane permease, at 267,164 to 268,066 _00254 CCNA_00255: CCNA_00255 - esterase, at 268,063 to 269,187 _00255 CCNA_00256: CCNA_00256 - pyridoxine kinase, at 269,206 to 270,057 _00256 CCNA_00257: CCNA_00257 - adenosylhomocysteinase, at 270,176 to 271,567 _00257 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 267.154 kb on + strandat 267.154 kb on + strandat 267.155 kb on + strandat 267.162 kb on - strandat 267.190 kb on - strandat 267.205 kb on - strandat 267.249 kb on + strandat 267.257 kb on - strand, within CCNA_00254at 267.307 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.345 kb on + strand, within CCNA_00254at 267.356 kb on - strand, within CCNA_00254at 267.363 kb on - strand, within CCNA_00254at 267.368 kb on + strand, within CCNA_00254at 267.374 kb on + strand, within CCNA_00254at 267.377 kb on - strand, within CCNA_00254at 267.393 kb on - strand, within CCNA_00254at 267.399 kb on - strand, within CCNA_00254at 267.443 kb on + strand, within CCNA_00254at 267.443 kb on + strand, within CCNA_00254at 267.443 kb on + strand, within CCNA_00254at 267.451 kb on - strand, within CCNA_00254at 267.451 kb on - strand, within CCNA_00254at 267.562 kb on + strand, within CCNA_00254at 267.570 kb on - strand, within CCNA_00254at 267.570 kb on - strand, within CCNA_00254at 267.645 kb on + strand, within CCNA_00254at 267.645 kb on + strand, within CCNA_00254at 267.650 kb on + strand, within CCNA_00254at 267.651 kb on - strand, within CCNA_00254at 267.653 kb on - strand, within CCNA_00254at 267.653 kb on - strand, within CCNA_00254at 267.653 kb on - strand, within CCNA_00254at 267.658 kb on - strand, within CCNA_00254at 267.658 kb on - strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.708 kb on - strand, within CCNA_00254at 267.734 kb on - strand, within CCNA_00254at 267.746 kb on + strand, within CCNA_00254at 267.779 kb on + strandat 267.780 kb on + strand, within CCNA_00254at 267.843 kb on + strand, within CCNA_00254at 267.852 kb on + strand, within CCNA_00254at 267.860 kb on + strand, within CCNA_00254at 267.916 kb on - strand, within CCNA_00254at 267.937 kb on - strand, within CCNA_00254at 267.972 kb on - strand, within CCNA_00254at 268.010 kb on - strandat 268.059 kb on - strandat 268.062 kb on + strandat 268.069 kb on - strandat 268.072 kb on + strandat 268.281 kb on - strand, within CCNA_00255at 268.384 kb on - strand, within CCNA_00255at 268.615 kb on + strand, within CCNA_00255at 268.718 kb on - strand, within CCNA_00255at 268.765 kb on - strand, within CCNA_00255at 269.140 kb on + strandat 269.211 kb on - strandat 269.212 kb on - strandat 269.287 kb on + strandat 269.287 kb on + strandat 269.312 kb on + strand, within CCNA_00256at 269.320 kb on - strand, within CCNA_00256at 269.356 kb on + strand, within CCNA_00256at 269.388 kb on - strand, within CCNA_00256at 269.429 kb on + strand, within CCNA_00256at 269.433 kb on - strand, within CCNA_00256at 269.437 kb on - strand, within CCNA_00256at 269.437 kb on - strand, within CCNA_00256at 269.446 kb on + strand, within CCNA_00256at 269.454 kb on - strand, within CCNA_00256at 269.467 kb on + strand, within CCNA_00256at 269.467 kb on + strand, within CCNA_00256at 269.475 kb on - strand, within CCNA_00256at 269.475 kb on - strand, within CCNA_00256at 269.490 kb on - strand, within CCNA_00256at 269.490 kb on - strand, within CCNA_00256at 269.499 kb on + strand, within CCNA_00256at 269.507 kb on - strand, within CCNA_00256at 269.512 kb on - strand, within CCNA_00256at 269.512 kb on - strand, within CCNA_00256at 269.512 kb on - strand, within CCNA_00256at 269.527 kb on - strand, within CCNA_00256at 269.537 kb on - strand, within CCNA_00256at 269.573 kb on + strand, within CCNA_00256at 269.594 kb on + strand, within CCNA_00256at 269.600 kb on - strand, within CCNA_00256at 269.602 kb on + strand, within CCNA_00256at 269.608 kb on + strand, within CCNA_00256at 269.642 kb on - strand, within CCNA_00256at 269.666 kb on + strand, within CCNA_00256at 269.671 kb on + strand, within CCNA_00256at 269.671 kb on + strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.701 kb on - strand, within CCNA_00256at 269.717 kb on + strand, within CCNA_00256at 269.725 kb on + strand, within CCNA_00256at 269.725 kb on + strand, within CCNA_00256at 269.725 kb on + strand, within CCNA_00256at 269.725 kb on + strand, within CCNA_00256at 269.733 kb on - strandat 269.733 kb on - strand, within CCNA_00256at 269.733 kb on - strand, within CCNA_00256at 269.773 kb on - strand, within CCNA_00256at 269.773 kb on - strand, within CCNA_00256at 269.801 kb on - strand, within CCNA_00256at 269.819 kb on + strand, within CCNA_00256at 269.824 kb on + strand, within CCNA_00256at 269.827 kb on - strand, within CCNA_00256at 269.864 kb on - strand, within CCNA_00256at 269.872 kb on - strand, within CCNA_00256at 269.873 kb on - strand, within CCNA_00256at 269.876 kb on + strand, within CCNA_00256at 269.876 kb on + strand, within CCNA_00256at 269.876 kb on + strand, within CCNA_00256at 269.878 kb on + strand, within CCNA_00256at 269.884 kb on - strand, within CCNA_00256at 269.884 kb on - strand, within CCNA_00256at 269.884 kb on - strand, within CCNA_00256at 269.925 kb on - strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.979 kb on + strandat 269.979 kb on + strandat 269.987 kb on + strandat 269.987 kb on + strandat 269.992 kb on + strandat 269.992 kb on + strandat 269.995 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.000 kb on - strandat 270.010 kb on + strandat 270.064 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep1 58 days
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267,154 + -0.0
267,154 + +0.0
267,155 + +1.0
267,162 - +0.4
267,190 - -2.6
267,205 - -0.6
267,249 + -0.1
267,257 - CCNA_00254 0.10 -2.5
267,307 + CCNA_00254 0.16 -0.2
267,333 + CCNA_00254 0.19 +1.0
267,333 + CCNA_00254 0.19 -0.3
267,333 + CCNA_00254 0.19 +0.4
267,333 + CCNA_00254 0.19 -1.1
267,341 - CCNA_00254 0.20 -1.6
267,341 - CCNA_00254 0.20 -0.6
267,341 - CCNA_00254 0.20 -1.7
267,341 - CCNA_00254 0.20 -2.6
267,341 - CCNA_00254 0.20 -1.1
267,341 - CCNA_00254 0.20 -0.9
267,341 - CCNA_00254 0.20 -0.6
267,341 - CCNA_00254 0.20 -0.5
267,345 + CCNA_00254 0.20 +0.6
267,356 - CCNA_00254 0.21 -2.7
267,363 - CCNA_00254 0.22 +0.2
267,368 + CCNA_00254 0.23 +0.2
267,374 + CCNA_00254 0.23 +0.3
267,377 - CCNA_00254 0.24 -0.4
267,393 - CCNA_00254 0.25 +0.5
267,399 - CCNA_00254 0.26 +2.2
267,443 + CCNA_00254 0.31 +0.1
267,443 + CCNA_00254 0.31 +0.3
267,443 + CCNA_00254 0.31 +0.1
267,451 - CCNA_00254 0.32 -3.0
267,451 - CCNA_00254 0.32 -0.1
267,562 + CCNA_00254 0.44 -0.9
267,570 - CCNA_00254 0.45 -2.2
267,570 - CCNA_00254 0.45 -0.0
267,645 + CCNA_00254 0.53 +0.2
267,645 + CCNA_00254 0.53 +0.2
267,650 + CCNA_00254 0.54 +0.0
267,651 - CCNA_00254 0.54 +1.6
267,653 - CCNA_00254 0.54 +1.3
267,653 - CCNA_00254 0.54 -1.1
267,653 - CCNA_00254 0.54 -0.5
267,658 - CCNA_00254 0.55 +1.0
267,658 - CCNA_00254 0.55 +0.6
267,688 + CCNA_00254 0.58 -0.6
267,688 + CCNA_00254 0.58 -0.0
267,688 + CCNA_00254 0.58 +0.9
267,688 + CCNA_00254 0.58 -0.0
267,696 - CCNA_00254 0.59 -0.4
267,708 - CCNA_00254 0.60 -1.5
267,734 - CCNA_00254 0.63 -2.4
267,746 + CCNA_00254 0.64 +0.2
267,779 + -1.3
267,780 + CCNA_00254 0.68 +0.1
267,843 + CCNA_00254 0.75 +0.5
267,852 + CCNA_00254 0.76 -0.6
267,860 + CCNA_00254 0.77 +1.6
267,916 - CCNA_00254 0.83 -0.6
267,937 - CCNA_00254 0.86 +0.5
267,972 - CCNA_00254 0.89 -0.1
268,010 - -0.5
268,059 - -0.3
268,062 + -2.2
268,069 - +0.2
268,072 + -1.7
268,281 - CCNA_00255 0.19 -0.5
268,384 - CCNA_00255 0.29 -1.3
268,615 + CCNA_00255 0.49 -0.5
268,718 - CCNA_00255 0.58 -1.0
268,765 - CCNA_00255 0.62 -3.1
269,140 + -1.3
269,211 - +0.3
269,212 - -0.3
269,287 + -1.7
269,287 + +0.9
269,312 + CCNA_00256 0.12 +0.6
269,320 - CCNA_00256 0.13 -0.6
269,356 + CCNA_00256 0.18 -2.0
269,388 - CCNA_00256 0.21 +0.5
269,429 + CCNA_00256 0.26 +1.1
269,433 - CCNA_00256 0.27 +0.6
269,437 - CCNA_00256 0.27 +0.3
269,437 - CCNA_00256 0.27 -0.7
269,446 + CCNA_00256 0.28 -0.7
269,454 - CCNA_00256 0.29 +3.2
269,467 + CCNA_00256 0.31 +1.5
269,467 + CCNA_00256 0.31 -0.0
269,475 - CCNA_00256 0.32 +0.3
269,475 - CCNA_00256 0.32 +0.3
269,490 - CCNA_00256 0.33 +0.2
269,490 - CCNA_00256 0.33 +0.7
269,499 + CCNA_00256 0.34 +1.9
269,507 - CCNA_00256 0.35 +0.7
269,512 - CCNA_00256 0.36 -0.1
269,512 - CCNA_00256 0.36 -0.6
269,512 - CCNA_00256 0.36 -0.6
269,527 - CCNA_00256 0.38 +1.9
269,537 - CCNA_00256 0.39 +0.4
269,573 + CCNA_00256 0.43 -0.7
269,594 + CCNA_00256 0.46 -3.1
269,600 - CCNA_00256 0.46 -0.1
269,602 + CCNA_00256 0.46 -1.5
269,608 + CCNA_00256 0.47 +2.0
269,642 - CCNA_00256 0.51 -0.5
269,666 + CCNA_00256 0.54 -1.0
269,671 + CCNA_00256 0.55 +0.3
269,671 + CCNA_00256 0.55 -0.5
269,679 - CCNA_00256 0.56 -2.3
269,679 - CCNA_00256 0.56 -1.5
269,679 - CCNA_00256 0.56 -0.6
269,679 - CCNA_00256 0.56 -0.5
269,701 - CCNA_00256 0.58 +0.5
269,717 + CCNA_00256 0.60 -1.3
269,725 + CCNA_00256 0.61 +0.9
269,725 + CCNA_00256 0.61 -2.9
269,725 + CCNA_00256 0.61 -1.1
269,725 + CCNA_00256 0.61 -1.5
269,733 - -2.0
269,733 - CCNA_00256 0.62 +0.8
269,733 - CCNA_00256 0.62 -0.2
269,773 - CCNA_00256 0.67 +2.3
269,773 - CCNA_00256 0.67 +0.2
269,801 - CCNA_00256 0.70 +0.3
269,819 + CCNA_00256 0.72 -0.9
269,824 + CCNA_00256 0.73 -1.3
269,827 - CCNA_00256 0.73 -0.1
269,864 - CCNA_00256 0.77 -2.7
269,872 - CCNA_00256 0.78 -1.0
269,873 - CCNA_00256 0.78 +0.7
269,876 + CCNA_00256 0.79 -2.4
269,876 + CCNA_00256 0.79 -0.2
269,876 + CCNA_00256 0.79 +2.0
269,878 + CCNA_00256 0.79 +1.4
269,884 - CCNA_00256 0.80 -0.2
269,884 - CCNA_00256 0.80 -0.0
269,884 - CCNA_00256 0.80 +0.1
269,925 - CCNA_00256 0.84 -0.6
269,969 + CCNA_00256 0.90 -3.0
269,969 + CCNA_00256 0.90 +0.4
269,969 + CCNA_00256 0.90 -0.7
269,969 + CCNA_00256 0.90 +0.4
269,969 + CCNA_00256 0.90 -1.8
269,969 + CCNA_00256 0.90 -0.7
269,977 - -0.4
269,977 - -2.2
269,977 - -1.2
269,977 - -0.3
269,977 - +0.6
269,977 - +1.1
269,977 - -0.3
269,979 + +1.1
269,979 + -1.1
269,987 + -0.3
269,987 + -0.7
269,992 + -0.6
269,992 + -0.0
269,995 - +0.4
270,000 - -2.8
270,000 - -0.1
270,000 - +1.5
270,000 - -0.8
270,000 - -0.2
270,000 - +0.9
270,000 - +2.3
270,010 + +0.2
270,064 + -0.6
270,084 + +0.2
270,084 + +0.0
270,084 + -0.4
270,084 + -2.6
270,084 + -0.5
270,084 + +0.2
270,092 - -0.8
270,092 - -2.0
270,092 - -1.1
270,092 - -1.4
270,092 - +1.9
270,092 - +0.5
270,092 - -0.9
270,092 - -2.4
270,092 - -1.3
270,092 - -3.0
270,092 - +0.3
270,092 - -0.4
270,141 + -2.1

Or see this region's nucleotide sequence