Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00253

Experiment: PYE 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00252 and CCNA_00253 are separated by 253 nucleotidesCCNA_00253 and CCNA_00254 are separated by 136 nucleotides CCNA_00252: CCNA_00252 - multimodular transpeptidase-transglycosylase PbpX, at 263,784 to 265,745 _00252 CCNA_00253: CCNA_00253 - aspartate-semialdehyde dehydrogenase, at 265,999 to 267,027 _00253 CCNA_00254: CCNA_00254 - RarD family membrane permease, at 267,164 to 268,066 _00254 Position (kb) 265 266 267 268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 265.025 kb on + strand, within CCNA_00252at 265.036 kb on - strand, within CCNA_00252at 265.203 kb on - strand, within CCNA_00252at 265.235 kb on - strand, within CCNA_00252at 265.250 kb on - strand, within CCNA_00252at 265.250 kb on - strand, within CCNA_00252at 265.293 kb on + strand, within CCNA_00252at 265.293 kb on + strand, within CCNA_00252at 265.293 kb on + strand, within CCNA_00252at 265.324 kb on - strand, within CCNA_00252at 265.339 kb on - strand, within CCNA_00252at 265.339 kb on - strand, within CCNA_00252at 265.340 kb on + strand, within CCNA_00252at 265.361 kb on - strand, within CCNA_00252at 265.385 kb on - strand, within CCNA_00252at 265.418 kb on - strand, within CCNA_00252at 265.535 kb on - strand, within CCNA_00252at 265.552 kb on - strandat 265.570 kb on + strandat 265.576 kb on + strandat 265.578 kb on - strandat 265.579 kb on + strandat 265.586 kb on + strandat 265.594 kb on - strandat 265.619 kb on - strandat 265.636 kb on + strandat 265.680 kb on - strandat 265.684 kb on + strandat 265.746 kb on - strandat 265.755 kb on + strandat 265.771 kb on + strandat 265.771 kb on + strandat 265.771 kb on + strandat 265.786 kb on + strandat 265.792 kb on - strandat 265.794 kb on - strandat 265.800 kb on - strandat 265.802 kb on - strandat 265.803 kb on + strandat 265.852 kb on - strandat 265.858 kb on + strandat 265.890 kb on + strandat 265.892 kb on + strandat 265.904 kb on - strandat 265.911 kb on - strandat 265.941 kb on + strandat 265.982 kb on + strandat 265.982 kb on + strandat 265.982 kb on + strandat 265.982 kb on + strandat 265.984 kb on + strandat 265.984 kb on + strandat 265.984 kb on + strandat 265.984 kb on + strandat 265.984 kb on + strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.990 kb on - strandat 265.992 kb on - strandat 266.001 kb on + strandat 266.001 kb on + strandat 266.071 kb on + strandat 266.091 kb on + strandat 266.107 kb on - strand, within CCNA_00253at 266.108 kb on + strand, within CCNA_00253at 266.159 kb on + strand, within CCNA_00253at 266.173 kb on - strand, within CCNA_00253at 266.173 kb on - strand, within CCNA_00253at 266.190 kb on + strand, within CCNA_00253at 266.192 kb on - strand, within CCNA_00253at 266.208 kb on - strand, within CCNA_00253at 266.234 kb on - strand, within CCNA_00253at 266.240 kb on - strand, within CCNA_00253at 266.240 kb on - strand, within CCNA_00253at 266.240 kb on - strand, within CCNA_00253at 266.240 kb on - strand, within CCNA_00253at 266.240 kb on - strand, within CCNA_00253at 266.240 kb on - strand, within CCNA_00253at 266.279 kb on + strand, within CCNA_00253at 266.299 kb on + strand, within CCNA_00253at 266.312 kb on + strand, within CCNA_00253at 266.341 kb on + strand, within CCNA_00253at 266.364 kb on + strand, within CCNA_00253at 266.396 kb on + strand, within CCNA_00253at 266.427 kb on - strand, within CCNA_00253at 266.430 kb on + strand, within CCNA_00253at 266.430 kb on + strand, within CCNA_00253at 266.451 kb on + strand, within CCNA_00253at 266.458 kb on + strand, within CCNA_00253at 266.482 kb on + strand, within CCNA_00253at 266.482 kb on + strand, within CCNA_00253at 266.490 kb on + strand, within CCNA_00253at 266.505 kb on - strand, within CCNA_00253at 266.514 kb on + strand, within CCNA_00253at 266.514 kb on + strand, within CCNA_00253at 266.514 kb on + strand, within CCNA_00253at 266.522 kb on - strand, within CCNA_00253at 266.525 kb on + strand, within CCNA_00253at 266.573 kb on + strand, within CCNA_00253at 266.608 kb on + strand, within CCNA_00253at 266.627 kb on - strand, within CCNA_00253at 266.650 kb on + strand, within CCNA_00253at 266.706 kb on + strand, within CCNA_00253at 266.714 kb on - strand, within CCNA_00253at 266.728 kb on - strand, within CCNA_00253at 266.730 kb on + strand, within CCNA_00253at 266.764 kb on + strand, within CCNA_00253at 266.764 kb on + strand, within CCNA_00253at 266.772 kb on - strand, within CCNA_00253at 266.826 kb on - strand, within CCNA_00253at 266.830 kb on + strand, within CCNA_00253at 266.854 kb on - strand, within CCNA_00253at 266.892 kb on + strand, within CCNA_00253at 266.920 kb on - strand, within CCNA_00253at 266.943 kb on + strandat 266.943 kb on + strandat 266.951 kb on - strandat 266.968 kb on + strandat 267.006 kb on - strandat 267.009 kb on + strandat 267.009 kb on + strandat 267.016 kb on + strandat 267.016 kb on + strandat 267.017 kb on - strandat 267.017 kb on - strandat 267.021 kb on + strandat 267.024 kb on - strandat 267.024 kb on - strandat 267.061 kb on - strandat 267.154 kb on + strandat 267.154 kb on + strandat 267.155 kb on + strandat 267.162 kb on - strandat 267.190 kb on - strandat 267.205 kb on - strandat 267.249 kb on + strandat 267.257 kb on - strand, within CCNA_00254at 267.307 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.345 kb on + strand, within CCNA_00254at 267.356 kb on - strand, within CCNA_00254at 267.363 kb on - strand, within CCNA_00254at 267.368 kb on + strand, within CCNA_00254at 267.374 kb on + strand, within CCNA_00254at 267.377 kb on - strand, within CCNA_00254at 267.393 kb on - strand, within CCNA_00254at 267.399 kb on - strand, within CCNA_00254at 267.443 kb on + strand, within CCNA_00254at 267.443 kb on + strand, within CCNA_00254at 267.443 kb on + strand, within CCNA_00254at 267.451 kb on - strand, within CCNA_00254at 267.451 kb on - strand, within CCNA_00254at 267.562 kb on + strand, within CCNA_00254at 267.570 kb on - strand, within CCNA_00254at 267.570 kb on - strand, within CCNA_00254at 267.645 kb on + strand, within CCNA_00254at 267.645 kb on + strand, within CCNA_00254at 267.650 kb on + strand, within CCNA_00254at 267.651 kb on - strand, within CCNA_00254at 267.653 kb on - strand, within CCNA_00254at 267.653 kb on - strand, within CCNA_00254at 267.653 kb on - strand, within CCNA_00254at 267.658 kb on - strand, within CCNA_00254at 267.658 kb on - strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.708 kb on - strand, within CCNA_00254at 267.734 kb on - strand, within CCNA_00254at 267.746 kb on + strand, within CCNA_00254at 267.779 kb on + strandat 267.780 kb on + strand, within CCNA_00254at 267.843 kb on + strand, within CCNA_00254at 267.852 kb on + strand, within CCNA_00254at 267.860 kb on + strand, within CCNA_00254at 267.916 kb on - strand, within CCNA_00254at 267.937 kb on - strand, within CCNA_00254at 267.972 kb on - strand, within CCNA_00254at 268.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep1 58 days
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265,025 + CCNA_00252 0.63 +0.3
265,036 - CCNA_00252 0.64 -2.5
265,203 - CCNA_00252 0.72 -0.9
265,235 - CCNA_00252 0.74 -3.7
265,250 - CCNA_00252 0.75 -1.6
265,250 - CCNA_00252 0.75 -1.3
265,293 + CCNA_00252 0.77 +1.9
265,293 + CCNA_00252 0.77 -0.9
265,293 + CCNA_00252 0.77 +0.3
265,324 - CCNA_00252 0.78 -3.1
265,339 - CCNA_00252 0.79 -2.5
265,339 - CCNA_00252 0.79 -0.5
265,340 + CCNA_00252 0.79 -0.9
265,361 - CCNA_00252 0.80 -2.0
265,385 - CCNA_00252 0.82 -2.7
265,418 - CCNA_00252 0.83 -0.8
265,535 - CCNA_00252 0.89 -1.3
265,552 - +1.9
265,570 + -2.0
265,576 + -2.5
265,578 - -1.3
265,579 + -4.3
265,586 + +1.9
265,594 - -0.9
265,619 - -0.9
265,636 + -1.8
265,680 - -0.4
265,684 + -3.4
265,746 - +2.7
265,755 + -0.6
265,771 + -2.3
265,771 + -0.7
265,771 + +1.3
265,786 + -1.5
265,792 - +0.3
265,794 - +0.1
265,800 - -0.1
265,802 - -2.0
265,803 + +0.3
265,852 - +0.4
265,858 + -1.0
265,890 + -1.0
265,892 + -0.5
265,904 - -0.8
265,911 - -2.0
265,941 + -0.6
265,982 + +0.6
265,982 + -1.0
265,982 + +0.0
265,982 + -0.2
265,984 + -0.2
265,984 + +1.0
265,984 + +0.8
265,984 + -1.0
265,984 + -0.8
265,990 - -1.4
265,990 - +0.2
265,990 - +1.2
265,990 - -0.3
265,990 - -2.1
265,990 - -2.5
265,990 - +0.3
265,992 - +2.9
266,001 + +0.8
266,001 + -0.3
266,071 + +1.1
266,091 + +2.4
266,107 - CCNA_00253 0.10 +2.6
266,108 + CCNA_00253 0.11 +1.2
266,159 + CCNA_00253 0.16 +0.4
266,173 - CCNA_00253 0.17 +2.4
266,173 - CCNA_00253 0.17 +1.3
266,190 + CCNA_00253 0.19 +1.6
266,192 - CCNA_00253 0.19 +0.1
266,208 - CCNA_00253 0.20 +0.0
266,234 - CCNA_00253 0.23 -2.7
266,240 - CCNA_00253 0.23 +0.6
266,240 - CCNA_00253 0.23 +0.2
266,240 - CCNA_00253 0.23 -1.6
266,240 - CCNA_00253 0.23 +1.3
266,240 - CCNA_00253 0.23 -0.8
266,240 - CCNA_00253 0.23 +1.9
266,279 + CCNA_00253 0.27 +0.6
266,299 + CCNA_00253 0.29 +0.9
266,312 + CCNA_00253 0.30 +1.3
266,341 + CCNA_00253 0.33 +2.4
266,364 + CCNA_00253 0.35 +2.6
266,396 + CCNA_00253 0.39 +2.3
266,427 - CCNA_00253 0.42 +0.7
266,430 + CCNA_00253 0.42 +1.7
266,430 + CCNA_00253 0.42 +1.6
266,451 + CCNA_00253 0.44 +1.0
266,458 + CCNA_00253 0.45 +2.9
266,482 + CCNA_00253 0.47 +2.3
266,482 + CCNA_00253 0.47 +1.8
266,490 + CCNA_00253 0.48 +2.7
266,505 - CCNA_00253 0.49 +1.9
266,514 + CCNA_00253 0.50 -0.1
266,514 + CCNA_00253 0.50 +3.6
266,514 + CCNA_00253 0.50 +0.9
266,522 - CCNA_00253 0.51 +0.4
266,525 + CCNA_00253 0.51 +0.5
266,573 + CCNA_00253 0.56 +2.2
266,608 + CCNA_00253 0.59 +2.3
266,627 - CCNA_00253 0.61 +1.9
266,650 + CCNA_00253 0.63 +1.4
266,706 + CCNA_00253 0.69 +2.3
266,714 - CCNA_00253 0.69 +1.4
266,728 - CCNA_00253 0.71 -0.1
266,730 + CCNA_00253 0.71 +2.2
266,764 + CCNA_00253 0.74 +1.7
266,764 + CCNA_00253 0.74 +2.8
266,772 - CCNA_00253 0.75 +0.9
266,826 - CCNA_00253 0.80 -0.1
266,830 + CCNA_00253 0.81 +2.5
266,854 - CCNA_00253 0.83 +0.4
266,892 + CCNA_00253 0.87 +1.9
266,920 - CCNA_00253 0.90 -0.4
266,943 + +2.1
266,943 + +3.9
266,951 - +0.5
266,968 + +1.6
267,006 - -0.1
267,009 + +1.1
267,009 + -0.2
267,016 + +1.2
267,016 + +1.8
267,017 - +1.0
267,017 - -0.1
267,021 + +1.9
267,024 - -1.1
267,024 - -0.7
267,061 - -2.3
267,154 + -0.0
267,154 + +0.0
267,155 + +1.0
267,162 - +0.4
267,190 - -2.6
267,205 - -0.6
267,249 + -0.1
267,257 - CCNA_00254 0.10 -2.5
267,307 + CCNA_00254 0.16 -0.2
267,333 + CCNA_00254 0.19 +1.0
267,333 + CCNA_00254 0.19 -0.3
267,333 + CCNA_00254 0.19 +0.4
267,333 + CCNA_00254 0.19 -1.1
267,341 - CCNA_00254 0.20 -1.6
267,341 - CCNA_00254 0.20 -0.6
267,341 - CCNA_00254 0.20 -1.7
267,341 - CCNA_00254 0.20 -2.6
267,341 - CCNA_00254 0.20 -1.1
267,341 - CCNA_00254 0.20 -0.9
267,341 - CCNA_00254 0.20 -0.6
267,341 - CCNA_00254 0.20 -0.5
267,345 + CCNA_00254 0.20 +0.6
267,356 - CCNA_00254 0.21 -2.7
267,363 - CCNA_00254 0.22 +0.2
267,368 + CCNA_00254 0.23 +0.2
267,374 + CCNA_00254 0.23 +0.3
267,377 - CCNA_00254 0.24 -0.4
267,393 - CCNA_00254 0.25 +0.5
267,399 - CCNA_00254 0.26 +2.2
267,443 + CCNA_00254 0.31 +0.1
267,443 + CCNA_00254 0.31 +0.3
267,443 + CCNA_00254 0.31 +0.1
267,451 - CCNA_00254 0.32 -3.0
267,451 - CCNA_00254 0.32 -0.1
267,562 + CCNA_00254 0.44 -0.9
267,570 - CCNA_00254 0.45 -2.2
267,570 - CCNA_00254 0.45 -0.0
267,645 + CCNA_00254 0.53 +0.2
267,645 + CCNA_00254 0.53 +0.2
267,650 + CCNA_00254 0.54 +0.0
267,651 - CCNA_00254 0.54 +1.6
267,653 - CCNA_00254 0.54 +1.3
267,653 - CCNA_00254 0.54 -1.1
267,653 - CCNA_00254 0.54 -0.5
267,658 - CCNA_00254 0.55 +1.0
267,658 - CCNA_00254 0.55 +0.6
267,688 + CCNA_00254 0.58 -0.6
267,688 + CCNA_00254 0.58 -0.0
267,688 + CCNA_00254 0.58 +0.9
267,688 + CCNA_00254 0.58 -0.0
267,696 - CCNA_00254 0.59 -0.4
267,708 - CCNA_00254 0.60 -1.5
267,734 - CCNA_00254 0.63 -2.4
267,746 + CCNA_00254 0.64 +0.2
267,779 + -1.3
267,780 + CCNA_00254 0.68 +0.1
267,843 + CCNA_00254 0.75 +0.5
267,852 + CCNA_00254 0.76 -0.6
267,860 + CCNA_00254 0.77 +1.6
267,916 - CCNA_00254 0.83 -0.6
267,937 - CCNA_00254 0.86 +0.5
267,972 - CCNA_00254 0.89 -0.1
268,010 - -0.5

Or see this region's nucleotide sequence