Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00213

Experiment: PYE 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00211 and CCNA_00212 overlap by 1 nucleotidesCCNA_00212 and CCNA_00213 overlap by 4 nucleotidesCCNA_00213 and CCNA_00214 are separated by 145 nucleotides CCNA_00211: CCNA_00211 - Porphyromonas-type peptidyl-arginine deiminase, at 227,686 to 228,693 _00211 CCNA_00212: CCNA_00212 - N-carbamoylputrescine amidase, at 228,693 to 229,571 _00212 CCNA_00213: CCNA_00213 - ribosomal-protein-alanine acetyltransferase, at 229,568 to 230,116 _00213 CCNA_00214: CCNA_00214 - TonB-dependent receptor, at 230,262 to 232,307 _00214 Position (kb) 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 228.676 kb on - strandat 229.535 kb on + strandat 229.538 kb on + strandat 229.538 kb on + strandat 229.538 kb on + strandat 229.538 kb on + strandat 229.543 kb on - strandat 229.543 kb on - strandat 229.546 kb on - strandat 229.546 kb on - strandat 229.546 kb on - strandat 229.546 kb on - strandat 229.562 kb on + strandat 229.570 kb on + strandat 229.592 kb on - strandat 229.633 kb on + strand, within CCNA_00213at 229.711 kb on + strand, within CCNA_00213at 229.835 kb on + strand, within CCNA_00213at 229.864 kb on + strand, within CCNA_00213at 229.871 kb on + strand, within CCNA_00213at 229.871 kb on + strand, within CCNA_00213at 229.876 kb on + strand, within CCNA_00213at 229.876 kb on + strand, within CCNA_00213at 229.876 kb on + strand, within CCNA_00213at 229.879 kb on - strand, within CCNA_00213at 229.904 kb on + strand, within CCNA_00213at 229.909 kb on + strand, within CCNA_00213at 229.912 kb on - strand, within CCNA_00213at 229.912 kb on - strand, within CCNA_00213at 229.917 kb on + strand, within CCNA_00213at 229.918 kb on - strand, within CCNA_00213at 229.934 kb on - strand, within CCNA_00213at 229.962 kb on + strand, within CCNA_00213at 229.970 kb on - strand, within CCNA_00213at 230.052 kb on - strand, within CCNA_00213at 230.064 kb on + strandat 230.064 kb on + strandat 230.069 kb on + strandat 230.069 kb on + strandat 230.072 kb on - strandat 230.089 kb on + strandat 230.089 kb on + strandat 230.097 kb on - strandat 230.209 kb on + strandat 230.272 kb on + strandat 230.280 kb on - strandat 230.285 kb on - strandat 230.327 kb on + strandat 230.329 kb on + strandat 230.335 kb on - strandat 230.335 kb on - strandat 230.374 kb on - strandat 230.380 kb on - strandat 230.390 kb on - strandat 230.394 kb on + strandat 230.447 kb on + strandat 230.452 kb on + strandat 230.455 kb on - strandat 230.481 kb on + strand, within CCNA_00214at 230.489 kb on - strand, within CCNA_00214at 230.571 kb on - strand, within CCNA_00214at 230.575 kb on + strand, within CCNA_00214at 230.578 kb on + strand, within CCNA_00214at 230.586 kb on + strand, within CCNA_00214at 230.586 kb on + strand, within CCNA_00214at 230.591 kb on + strand, within CCNA_00214at 230.594 kb on - strand, within CCNA_00214at 230.594 kb on - strand, within CCNA_00214at 230.599 kb on + strand, within CCNA_00214at 230.604 kb on + strand, within CCNA_00214at 230.612 kb on - strand, within CCNA_00214at 230.672 kb on + strand, within CCNA_00214at 230.680 kb on - strand, within CCNA_00214at 230.682 kb on - strand, within CCNA_00214at 230.702 kb on + strand, within CCNA_00214at 230.702 kb on + strand, within CCNA_00214at 230.710 kb on - strand, within CCNA_00214at 230.710 kb on - strand, within CCNA_00214at 230.710 kb on - strand, within CCNA_00214at 230.710 kb on - strand, within CCNA_00214at 230.710 kb on - strand, within CCNA_00214at 230.738 kb on + strand, within CCNA_00214at 230.753 kb on + strand, within CCNA_00214at 230.761 kb on - strand, within CCNA_00214at 230.779 kb on - strand, within CCNA_00214at 230.825 kb on - strand, within CCNA_00214at 230.842 kb on - strand, within CCNA_00214at 230.844 kb on + strand, within CCNA_00214at 230.857 kb on - strand, within CCNA_00214at 230.891 kb on - strand, within CCNA_00214at 230.904 kb on + strand, within CCNA_00214at 230.906 kb on + strand, within CCNA_00214at 230.967 kb on - strand, within CCNA_00214at 230.972 kb on - strand, within CCNA_00214at 230.993 kb on + strand, within CCNA_00214at 230.993 kb on - strand, within CCNA_00214at 230.993 kb on - strand, within CCNA_00214at 231.027 kb on - strand, within CCNA_00214at 231.027 kb on - strand, within CCNA_00214at 231.029 kb on + strand, within CCNA_00214at 231.029 kb on + strand, within CCNA_00214at 231.050 kb on - strand, within CCNA_00214at 231.078 kb on + strand, within CCNA_00214at 231.086 kb on - strand, within CCNA_00214at 231.086 kb on - strand, within CCNA_00214at 231.086 kb on - strand, within CCNA_00214at 231.106 kb on + strand, within CCNA_00214at 231.113 kb on + strand, within CCNA_00214

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep1 58 days
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228,676 - -1.7
229,535 + -0.8
229,538 + +0.1
229,538 + -1.2
229,538 + +1.7
229,538 + +0.1
229,543 - +0.2
229,543 - -2.8
229,546 - -1.3
229,546 - +1.5
229,546 - -2.8
229,546 - +2.3
229,562 + +1.0
229,570 + +0.4
229,592 - -0.5
229,633 + CCNA_00213 0.12 -2.3
229,711 + CCNA_00213 0.26 -0.3
229,835 + CCNA_00213 0.49 +0.0
229,864 + CCNA_00213 0.54 -2.5
229,871 + CCNA_00213 0.55 -0.3
229,871 + CCNA_00213 0.55 +1.0
229,876 + CCNA_00213 0.56 -0.2
229,876 + CCNA_00213 0.56 -1.9
229,876 + CCNA_00213 0.56 -0.1
229,879 - CCNA_00213 0.57 -2.4
229,904 + CCNA_00213 0.61 -1.4
229,909 + CCNA_00213 0.62 -0.8
229,912 - CCNA_00213 0.63 -0.7
229,912 - CCNA_00213 0.63 -1.4
229,917 + CCNA_00213 0.64 -1.1
229,918 - CCNA_00213 0.64 +0.2
229,934 - CCNA_00213 0.67 -3.6
229,962 + CCNA_00213 0.72 +0.3
229,970 - CCNA_00213 0.73 -0.7
230,052 - CCNA_00213 0.88 -1.6
230,064 + +0.3
230,064 + +0.3
230,069 + +1.2
230,069 + -1.0
230,072 - +0.4
230,089 + +0.6
230,089 + +1.3
230,097 - +1.9
230,209 + -2.1
230,272 + +1.2
230,280 - -0.4
230,285 - -0.4
230,327 + +0.7
230,329 + -0.6
230,335 - -0.6
230,335 - +0.3
230,374 - -2.7
230,380 - -0.6
230,390 - +0.3
230,394 + +0.5
230,447 + -0.2
230,452 + -0.5
230,455 - -2.1
230,481 + CCNA_00214 0.11 -3.6
230,489 - CCNA_00214 0.11 -2.9
230,571 - CCNA_00214 0.15 -1.2
230,575 + CCNA_00214 0.15 +0.2
230,578 + CCNA_00214 0.15 -0.5
230,586 + CCNA_00214 0.16 +0.4
230,586 + CCNA_00214 0.16 -0.2
230,591 + CCNA_00214 0.16 +0.3
230,594 - CCNA_00214 0.16 -0.7
230,594 - CCNA_00214 0.16 -1.9
230,599 + CCNA_00214 0.16 -0.4
230,604 + CCNA_00214 0.17 -1.8
230,612 - CCNA_00214 0.17 -0.8
230,672 + CCNA_00214 0.20 +1.9
230,680 - CCNA_00214 0.20 -0.7
230,682 - CCNA_00214 0.21 -1.5
230,702 + CCNA_00214 0.22 -1.4
230,702 + CCNA_00214 0.22 +0.3
230,710 - CCNA_00214 0.22 -0.7
230,710 - CCNA_00214 0.22 -0.0
230,710 - CCNA_00214 0.22 -0.8
230,710 - CCNA_00214 0.22 -1.4
230,710 - CCNA_00214 0.22 -0.0
230,738 + CCNA_00214 0.23 +0.7
230,753 + CCNA_00214 0.24 +0.0
230,761 - CCNA_00214 0.24 -1.1
230,779 - CCNA_00214 0.25 +0.2
230,825 - CCNA_00214 0.28 -2.1
230,842 - CCNA_00214 0.28 -0.2
230,844 + CCNA_00214 0.28 +0.9
230,857 - CCNA_00214 0.29 +1.2
230,891 - CCNA_00214 0.31 -0.5
230,904 + CCNA_00214 0.31 -0.1
230,906 + CCNA_00214 0.31 -1.2
230,967 - CCNA_00214 0.34 +1.3
230,972 - CCNA_00214 0.35 -2.2
230,993 + CCNA_00214 0.36 -0.3
230,993 - CCNA_00214 0.36 -0.1
230,993 - CCNA_00214 0.36 +0.4
231,027 - CCNA_00214 0.37 -1.8
231,027 - CCNA_00214 0.37 -0.2
231,029 + CCNA_00214 0.37 -0.1
231,029 + CCNA_00214 0.37 -1.3
231,050 - CCNA_00214 0.39 +1.9
231,078 + CCNA_00214 0.40 -1.1
231,086 - CCNA_00214 0.40 -1.3
231,086 - CCNA_00214 0.40 +1.0
231,086 - CCNA_00214 0.40 -2.6
231,106 + CCNA_00214 0.41 +0.3
231,113 + CCNA_00214 0.42 -0.7

Or see this region's nucleotide sequence