Experiment: PYE 4C survival rep1 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00014 and CCNA_00015 overlap by 4 nucleotides CCNA_00015 and CCNA_00016 are separated by 0 nucleotides CCNA_00016 and CCNA_00017 overlap by 4 nucleotides CCNA_00017 and CCNA_00018 are separated by 3 nucleotides
CCNA_00014: CCNA_00014 - molybdenum cofactor biosynthesis protein C, at 17,018 to 17,494
_00014
CCNA_00015: CCNA_00015 - molybdenum cofactor biosynthesis protein B, at 17,491 to 18,042
_00015
CCNA_00016: CCNA_00016 - molybdopterin converting factor, large subunit, at 18,043 to 18,495
_00016
CCNA_00017: CCNA_00017 - molybdopterin converting factor, small subunit, at 18,492 to 18,731
_00017
CCNA_00018: CCNA_00018 - molybdenum cofactor biosynthesis protein A, at 18,735 to 19,784
_00018
Position (kb) 18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 17.087 kb on - strand, within CCNA_00014 at 17.106 kb on + strand, within CCNA_00014 at 17.114 kb on - strand, within CCNA_00014 at 17.114 kb on - strand, within CCNA_00014 at 17.117 kb on + strand, within CCNA_00014 at 17.143 kb on - strand, within CCNA_00014 at 17.187 kb on + strand, within CCNA_00014 at 17.187 kb on + strand, within CCNA_00014 at 17.187 kb on + strand, within CCNA_00014 at 17.187 kb on + strand, within CCNA_00014 at 17.195 kb on - strand, within CCNA_00014 at 17.195 kb on - strand, within CCNA_00014 at 17.195 kb on - strand, within CCNA_00014 at 17.195 kb on - strand, within CCNA_00014 at 17.195 kb on - strand at 17.244 kb on + strand, within CCNA_00014 at 17.244 kb on + strand, within CCNA_00014 at 17.244 kb on + strand, within CCNA_00014 at 17.244 kb on + strand, within CCNA_00014 at 17.244 kb on + strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.252 kb on - strand, within CCNA_00014 at 17.263 kb on - strand, within CCNA_00014 at 17.270 kb on - strand, within CCNA_00014 at 17.281 kb on + strand, within CCNA_00014 at 17.289 kb on - strand, within CCNA_00014 at 17.328 kb on + strand, within CCNA_00014 at 17.377 kb on - strand, within CCNA_00014 at 17.413 kb on + strand, within CCNA_00014 at 17.424 kb on + strand, within CCNA_00014 at 17.449 kb on - strand at 17.462 kb on + strand at 17.525 kb on + strand at 17.567 kb on + strand, within CCNA_00015 at 17.569 kb on - strand, within CCNA_00015 at 17.580 kb on - strand, within CCNA_00015 at 17.584 kb on - strand, within CCNA_00015 at 17.694 kb on + strand, within CCNA_00015 at 17.760 kb on + strand, within CCNA_00015 at 17.760 kb on + strand, within CCNA_00015 at 17.830 kb on - strand, within CCNA_00015 at 17.840 kb on + strand, within CCNA_00015 at 17.840 kb on + strand, within CCNA_00015 at 17.843 kb on - strand, within CCNA_00015 at 17.848 kb on - strand, within CCNA_00015 at 17.848 kb on - strand, within CCNA_00015 at 17.848 kb on - strand, within CCNA_00015 at 17.886 kb on + strand, within CCNA_00015 at 17.886 kb on + strand, within CCNA_00015 at 17.886 kb on + strand, within CCNA_00015 at 17.900 kb on + strand, within CCNA_00015 at 17.900 kb on + strand, within CCNA_00015 at 17.908 kb on - strand, within CCNA_00015 at 17.908 kb on - strand, within CCNA_00015 at 17.908 kb on - strand, within CCNA_00015 at 17.923 kb on - strand, within CCNA_00015 at 17.923 kb on - strand, within CCNA_00015 at 17.923 kb on - strand, within CCNA_00015 at 17.931 kb on + strand, within CCNA_00015 at 17.966 kb on - strand, within CCNA_00015 at 17.973 kb on - strand, within CCNA_00015 at 17.981 kb on - strand, within CCNA_00015 at 17.987 kb on + strand at 17.987 kb on + strand at 17.995 kb on - strand at 18.000 kb on + strand at 18.009 kb on - strand at 18.013 kb on - strand at 18.023 kb on + strand at 18.031 kb on - strand at 18.048 kb on - strand at 18.059 kb on - strand at 18.082 kb on - strand at 18.082 kb on - strand at 18.087 kb on - strand at 18.101 kb on - strand, within CCNA_00016 at 18.110 kb on - strand, within CCNA_00016 at 18.148 kb on + strand, within CCNA_00016 at 18.148 kb on + strand, within CCNA_00016 at 18.150 kb on + strand, within CCNA_00016 at 18.150 kb on + strand, within CCNA_00016 at 18.178 kb on + strand, within CCNA_00016 at 18.188 kb on - strand, within CCNA_00016 at 18.290 kb on - strand, within CCNA_00016 at 18.367 kb on + strand, within CCNA_00016 at 18.378 kb on + strand, within CCNA_00016 at 18.381 kb on - strand, within CCNA_00016 at 18.383 kb on + strand, within CCNA_00016 at 18.443 kb on + strand, within CCNA_00016 at 18.461 kb on + strand at 18.479 kb on - strand at 18.537 kb on + strand, within CCNA_00017 at 18.592 kb on + strand, within CCNA_00017 at 18.604 kb on + strand, within CCNA_00017 at 18.609 kb on + strand, within CCNA_00017 at 18.617 kb on - strand, within CCNA_00017 at 18.619 kb on + strand, within CCNA_00017 at 18.622 kb on - strand, within CCNA_00017 at 18.622 kb on - strand, within CCNA_00017 at 18.625 kb on + strand, within CCNA_00017 at 18.657 kb on - strand, within CCNA_00017 at 18.657 kb on - strand, within CCNA_00017 at 18.741 kb on - strand at 18.802 kb on + strand at 18.802 kb on + strand at 18.810 kb on - strand at 18.810 kb on - strand at 18.910 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.933 kb on + strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.989 kb on + strand, within CCNA_00018 at 18.992 kb on - strand, within CCNA_00018 at 18.995 kb on + strand, within CCNA_00018 at 19.064 kb on + strand, within CCNA_00018 at 19.105 kb on + strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.115 kb on + strand, within CCNA_00018 at 19.115 kb on + strand, within CCNA_00018 at 19.123 kb on - strand, within CCNA_00018 at 19.123 kb on - strand, within CCNA_00018 at 19.133 kb on - strand, within CCNA_00018 at 19.133 kb on - strand, within CCNA_00018 at 19.143 kb on - strand, within CCNA_00018 at 19.143 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.163 kb on + strand, within CCNA_00018 at 19.163 kb on + strand, within CCNA_00018 at 19.192 kb on - strand, within CCNA_00018 at 19.200 kb on - strand, within CCNA_00018 at 19.200 kb on - strand, within CCNA_00018 at 19.251 kb on - strand, within CCNA_00018 at 19.315 kb on + strand, within CCNA_00018 at 19.335 kb on - strand, within CCNA_00018 at 19.337 kb on + strand, within CCNA_00018 at 19.340 kb on - strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.416 kb on + strand, within CCNA_00018 at 19.441 kb on + strand, within CCNA_00018 at 19.444 kb on - strand, within CCNA_00018
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep1 58 days remove 17,087 - CCNA_00014 0.14 -0.7 17,106 + CCNA_00014 0.18 -3.4 17,114 - CCNA_00014 0.20 -1.7 17,114 - CCNA_00014 0.20 -2.1 17,117 + CCNA_00014 0.21 -3.1 17,143 - CCNA_00014 0.26 -0.9 17,187 + CCNA_00014 0.35 +1.9 17,187 + CCNA_00014 0.35 -1.3 17,187 + CCNA_00014 0.35 +1.6 17,187 + CCNA_00014 0.35 -1.8 17,195 - CCNA_00014 0.37 -0.8 17,195 - CCNA_00014 0.37 -1.0 17,195 - CCNA_00014 0.37 -1.3 17,195 - CCNA_00014 0.37 -1.2 17,195 - -1.6 17,244 + CCNA_00014 0.47 -2.0 17,244 + CCNA_00014 0.47 -0.8 17,244 + CCNA_00014 0.47 +0.9 17,244 + CCNA_00014 0.47 -0.9 17,244 + CCNA_00014 0.47 +0.0 17,252 - CCNA_00014 0.49 -1.7 17,252 - CCNA_00014 0.49 +0.9 17,252 - CCNA_00014 0.49 -0.1 17,252 - CCNA_00014 0.49 -1.8 17,252 - CCNA_00014 0.49 +0.6 17,252 - CCNA_00014 0.49 +0.6 17,252 - CCNA_00014 0.49 -0.3 17,252 - CCNA_00014 0.49 +0.0 17,252 - CCNA_00014 0.49 +1.9 17,252 - CCNA_00014 0.49 +1.7 17,263 - CCNA_00014 0.51 -2.1 17,270 - CCNA_00014 0.53 -0.3 17,281 + CCNA_00014 0.55 -0.8 17,289 - CCNA_00014 0.57 -1.2 17,328 + CCNA_00014 0.65 -2.6 17,377 - CCNA_00014 0.75 -0.2 17,413 + CCNA_00014 0.83 -1.1 17,424 + CCNA_00014 0.85 -2.7 17,449 - -1.2 17,462 + +0.6 17,525 + -3.5 17,567 + CCNA_00015 0.14 -2.3 17,569 - CCNA_00015 0.14 -0.6 17,580 - CCNA_00015 0.16 -1.7 17,584 - CCNA_00015 0.17 -1.1 17,694 + CCNA_00015 0.37 -0.3 17,760 + CCNA_00015 0.49 -1.9 17,760 + CCNA_00015 0.49 -0.8 17,830 - CCNA_00015 0.61 -0.4 17,840 + CCNA_00015 0.63 -2.6 17,840 + CCNA_00015 0.63 -2.3 17,843 - CCNA_00015 0.64 -1.7 17,848 - CCNA_00015 0.65 -1.3 17,848 - CCNA_00015 0.65 -1.4 17,848 - CCNA_00015 0.65 -1.5 17,886 + CCNA_00015 0.72 -0.1 17,886 + CCNA_00015 0.72 -0.6 17,886 + CCNA_00015 0.72 -1.3 17,900 + CCNA_00015 0.74 -0.7 17,900 + CCNA_00015 0.74 -1.9 17,908 - CCNA_00015 0.76 -1.7 17,908 - CCNA_00015 0.76 -1.9 17,908 - CCNA_00015 0.76 -0.4 17,923 - CCNA_00015 0.78 +0.5 17,923 - CCNA_00015 0.78 -2.6 17,923 - CCNA_00015 0.78 -2.2 17,931 + CCNA_00015 0.80 -1.0 17,966 - CCNA_00015 0.86 -0.2 17,973 - CCNA_00015 0.87 -1.5 17,981 - CCNA_00015 0.89 -1.7 17,987 + -0.0 17,987 + -0.4 17,995 - +1.5 18,000 + -1.1 18,009 - +2.2 18,013 - -0.2 18,023 + -0.8 18,031 - +0.1 18,048 - -0.1 18,059 - +1.0 18,082 - +1.0 18,082 - +0.1 18,087 - +1.4 18,101 - CCNA_00016 0.13 -3.0 18,110 - CCNA_00016 0.15 -2.1 18,148 + CCNA_00016 0.23 -1.9 18,148 + CCNA_00016 0.23 -2.2 18,150 + CCNA_00016 0.24 -2.1 18,150 + CCNA_00016 0.24 -1.3 18,178 + CCNA_00016 0.30 -2.2 18,188 - CCNA_00016 0.32 -0.7 18,290 - CCNA_00016 0.55 -2.2 18,367 + CCNA_00016 0.72 -0.6 18,378 + CCNA_00016 0.74 +2.5 18,381 - CCNA_00016 0.75 -1.2 18,383 + CCNA_00016 0.75 +0.1 18,443 + CCNA_00016 0.88 -2.2 18,461 + +1.9 18,479 - +0.1 18,537 + CCNA_00017 0.19 +2.2 18,592 + CCNA_00017 0.42 -0.1 18,604 + CCNA_00017 0.47 -2.3 18,609 + CCNA_00017 0.49 -2.0 18,617 - CCNA_00017 0.52 -2.6 18,619 + CCNA_00017 0.53 -0.6 18,622 - CCNA_00017 0.54 -0.2 18,622 - CCNA_00017 0.54 -0.9 18,625 + CCNA_00017 0.55 -1.1 18,657 - CCNA_00017 0.69 -2.1 18,657 - CCNA_00017 0.69 -0.9 18,741 - +0.6 18,802 + -2.0 18,802 + -1.2 18,810 - -3.2 18,810 - -1.4 18,910 - CCNA_00018 0.17 -3.4 18,920 - CCNA_00018 0.18 -1.0 18,920 - CCNA_00018 0.18 -0.1 18,933 + CCNA_00018 0.19 -0.6 18,941 - CCNA_00018 0.20 -0.5 18,941 - CCNA_00018 0.20 -0.5 18,941 - CCNA_00018 0.20 +0.5 18,989 + CCNA_00018 0.24 -0.2 18,992 - CCNA_00018 0.24 -2.5 18,995 + CCNA_00018 0.25 +0.3 19,064 + CCNA_00018 0.31 -0.5 19,105 + CCNA_00018 0.35 -1.3 19,113 - CCNA_00018 0.36 +0.3 19,113 - CCNA_00018 0.36 -0.3 19,115 + CCNA_00018 0.36 -1.3 19,115 + CCNA_00018 0.36 +0.3 19,123 - CCNA_00018 0.37 +1.5 19,123 - CCNA_00018 0.37 -2.2 19,133 - CCNA_00018 0.38 -0.5 19,133 - CCNA_00018 0.38 -1.3 19,143 - CCNA_00018 0.39 -0.7 19,143 - CCNA_00018 0.39 -0.3 19,161 - CCNA_00018 0.41 -0.3 19,161 - CCNA_00018 0.41 +0.7 19,161 - CCNA_00018 0.41 +1.9 19,163 + CCNA_00018 0.41 -0.9 19,163 + CCNA_00018 0.41 -1.0 19,192 - CCNA_00018 0.44 -1.1 19,200 - CCNA_00018 0.44 -1.2 19,200 - CCNA_00018 0.44 -0.9 19,251 - CCNA_00018 0.49 +0.2 19,315 + CCNA_00018 0.55 -1.3 19,335 - CCNA_00018 0.57 +0.1 19,337 + CCNA_00018 0.57 -1.4 19,340 - CCNA_00018 0.58 -0.1 19,342 + CCNA_00018 0.58 -3.6 19,342 + CCNA_00018 0.58 -3.8 19,342 + CCNA_00018 0.58 -1.5 19,342 + CCNA_00018 0.58 -2.6 19,416 + CCNA_00018 0.65 -1.7 19,441 + CCNA_00018 0.67 -1.1 19,444 - CCNA_00018 0.68 +0.1
Or see this region's nucleotide sequence