Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18555

Experiment: Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18550 and BWI76_RS18555 are separated by 124 nucleotidesBWI76_RS18555 and BWI76_RS18560 are separated by 194 nucleotidesBWI76_RS18560 and BWI76_RS18565 are separated by 53 nucleotidesBWI76_RS18565 and BWI76_RS18570 are separated by 0 nucleotides BWI76_RS18550: BWI76_RS18550 - tRNA-Asn, at 3,850,729 to 3,850,804 _RS18550 BWI76_RS18555: BWI76_RS18555 - MATE family multidrug exporter, at 3,850,929 to 3,852,386 _RS18555 BWI76_RS18560: BWI76_RS18560 - tRNA-Asn, at 3,852,581 to 3,852,656 _RS18560 BWI76_RS18565: BWI76_RS18565 - pemk protein, at 3,852,710 to 3,853,043 _RS18565 BWI76_RS18570: BWI76_RS18570 - hypothetical protein, at 3,853,044 to 3,853,247 _RS18570 Position (kb) 3850 3851 3852 3853Strain fitness (log2 ratio) -2 -1 0 1 2at 3849.931 kb on + strandat 3849.931 kb on - strandat 3849.952 kb on + strandat 3849.959 kb on - strandat 3849.960 kb on - strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.965 kb on + strandat 3849.973 kb on - strandat 3849.973 kb on - strandat 3849.973 kb on - strandat 3849.973 kb on - strandat 3849.973 kb on - strandat 3850.008 kb on + strandat 3850.011 kb on - strandat 3850.219 kb on - strandat 3850.323 kb on + strandat 3850.329 kb on + strandat 3850.329 kb on + strandat 3850.336 kb on + strandat 3850.336 kb on + strandat 3850.342 kb on - strandat 3850.344 kb on - strandat 3850.344 kb on - strandat 3850.344 kb on - strandat 3850.348 kb on + strandat 3850.353 kb on + strandat 3850.357 kb on - strandat 3850.361 kb on - strandat 3850.375 kb on + strandat 3850.412 kb on + strandat 3850.412 kb on + strandat 3850.420 kb on - strandat 3850.420 kb on - strandat 3850.435 kb on - strandat 3850.446 kb on + strandat 3850.459 kb on - strandat 3850.471 kb on + strandat 3850.479 kb on - strandat 3850.498 kb on + strandat 3850.550 kb on - strandat 3850.573 kb on + strandat 3850.573 kb on + strandat 3850.573 kb on + strandat 3850.581 kb on - strandat 3850.592 kb on + strandat 3850.627 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.632 kb on + strandat 3850.636 kb on + strandat 3850.638 kb on + strandat 3850.638 kb on + strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.640 kb on - strandat 3850.641 kb on + strandat 3850.641 kb on - strandat 3850.644 kb on - strandat 3850.648 kb on + strandat 3850.648 kb on + strandat 3850.753 kb on - strand, within BWI76_RS18550at 3851.110 kb on - strand, within BWI76_RS18555at 3851.180 kb on + strand, within BWI76_RS18555at 3851.201 kb on - strand, within BWI76_RS18555at 3851.272 kb on - strand, within BWI76_RS18555at 3851.291 kb on - strand, within BWI76_RS18555at 3851.380 kb on + strand, within BWI76_RS18555at 3851.562 kb on + strand, within BWI76_RS18555at 3851.641 kb on - strand, within BWI76_RS18555at 3851.878 kb on + strand, within BWI76_RS18555at 3851.910 kb on + strand, within BWI76_RS18555at 3851.910 kb on + strand, within BWI76_RS18555at 3851.918 kb on - strand, within BWI76_RS18555at 3851.918 kb on - strand, within BWI76_RS18555at 3851.947 kb on - strand, within BWI76_RS18555at 3851.947 kb on - strand, within BWI76_RS18555at 3851.955 kb on - strand, within BWI76_RS18555at 3852.213 kb on - strand, within BWI76_RS18555at 3852.251 kb on - strandat 3852.363 kb on + strandat 3852.381 kb on + strandat 3852.381 kb on - strandat 3852.415 kb on - strandat 3852.440 kb on + strandat 3852.505 kb on + strandat 3852.870 kb on + strand, within BWI76_RS18565at 3852.971 kb on - strand, within BWI76_RS18565at 3853.049 kb on - strandat 3853.231 kb on - strandat 3853.249 kb on + strandat 3853.262 kb on - strandat 3853.346 kb on + strandat 3853.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM
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3,849,931 + -0.5
3,849,931 - +0.7
3,849,952 + -0.3
3,849,959 - +0.6
3,849,960 - +0.5
3,849,965 + -0.0
3,849,965 + -1.7
3,849,965 + -0.1
3,849,965 + -0.4
3,849,965 + +0.4
3,849,965 + -0.5
3,849,965 + +0.0
3,849,973 - -0.4
3,849,973 - -0.0
3,849,973 - -0.1
3,849,973 - -0.8
3,849,973 - -0.6
3,850,008 + +0.4
3,850,011 - -0.1
3,850,219 - -0.4
3,850,323 + -0.4
3,850,329 + -0.5
3,850,329 + +0.0
3,850,336 + -0.5
3,850,336 + -0.5
3,850,342 - -0.1
3,850,344 - +0.4
3,850,344 - +0.4
3,850,344 - -0.6
3,850,348 + -1.2
3,850,353 + +0.7
3,850,357 - -1.1
3,850,361 - +0.2
3,850,375 + -0.9
3,850,412 + +2.4
3,850,412 + -0.6
3,850,420 - -0.9
3,850,420 - +0.0
3,850,435 - +2.6
3,850,446 + -0.5
3,850,459 - +0.4
3,850,471 + -0.5
3,850,479 - +1.0
3,850,498 + +0.5
3,850,550 - +0.5
3,850,573 + -0.4
3,850,573 + -1.0
3,850,573 + -0.7
3,850,581 - -0.5
3,850,592 + -1.2
3,850,627 + -0.4
3,850,632 + -0.0
3,850,632 + -0.1
3,850,632 + +0.3
3,850,632 + +0.4
3,850,632 + +0.2
3,850,632 + +0.1
3,850,632 + -0.8
3,850,632 + +0.2
3,850,632 + -0.1
3,850,632 + -0.2
3,850,632 + -0.3
3,850,632 + -0.1
3,850,632 + -0.3
3,850,636 + +0.1
3,850,638 + +0.1
3,850,638 + +0.3
3,850,640 - -0.2
3,850,640 - +0.0
3,850,640 - -0.3
3,850,640 - -0.6
3,850,640 - -0.6
3,850,640 - -0.4
3,850,640 - -0.6
3,850,640 - +0.1
3,850,641 + +2.0
3,850,641 - +0.4
3,850,644 - -0.6
3,850,648 + -0.4
3,850,648 + -0.1
3,850,753 - BWI76_RS18550 0.32 -0.2
3,851,110 - BWI76_RS18555 0.12 -2.5
3,851,180 + BWI76_RS18555 0.17 +2.4
3,851,201 - BWI76_RS18555 0.19 -1.8
3,851,272 - BWI76_RS18555 0.24 -2.3
3,851,291 - BWI76_RS18555 0.25 -1.2
3,851,380 + BWI76_RS18555 0.31 -1.5
3,851,562 + BWI76_RS18555 0.43 -1.3
3,851,641 - BWI76_RS18555 0.49 -1.2
3,851,878 + BWI76_RS18555 0.65 -1.8
3,851,910 + BWI76_RS18555 0.67 -2.1
3,851,910 + BWI76_RS18555 0.67 -2.5
3,851,918 - BWI76_RS18555 0.68 -0.8
3,851,918 - BWI76_RS18555 0.68 -1.6
3,851,947 - BWI76_RS18555 0.70 -2.2
3,851,947 - BWI76_RS18555 0.70 -1.6
3,851,955 - BWI76_RS18555 0.70 -2.3
3,852,213 - BWI76_RS18555 0.88 -0.6
3,852,251 - -1.4
3,852,363 + -0.2
3,852,381 + -2.6
3,852,381 - -1.3
3,852,415 - -1.7
3,852,440 + -1.4
3,852,505 + -0.0
3,852,870 + BWI76_RS18565 0.48 +0.4
3,852,971 - BWI76_RS18565 0.78 -0.2
3,853,049 - +0.6
3,853,231 - -1.9
3,853,249 + -0.6
3,853,262 - +0.2
3,853,346 + -0.2
3,853,379 + -0.1

Or see this region's nucleotide sequence