Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17645

Experiment: Nickel (II) chloride 1.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17640 and BWI76_RS17645 are separated by 366 nucleotidesBWI76_RS17645 and BWI76_RS17650 overlap by 8 nucleotides BWI76_RS17640: BWI76_RS17640 - luciferase-like protein, at 3,663,904 to 3,665,256 _RS17640 BWI76_RS17645: BWI76_RS17645 - hypothetical protein, at 3,665,623 to 3,666,423 _RS17645 BWI76_RS17650: BWI76_RS17650 - putative fatty acid desaturase, at 3,666,416 to 3,667,399 _RS17650 Position (kb) 3665 3666 3667Strain fitness (log2 ratio) -1 0 1at 3664.818 kb on + strand, within BWI76_RS17640at 3664.831 kb on - strand, within BWI76_RS17640at 3665.082 kb on - strand, within BWI76_RS17640at 3665.122 kb on - strandat 3665.385 kb on - strandat 3665.852 kb on - strand, within BWI76_RS17645at 3666.217 kb on - strand, within BWI76_RS17645at 3666.433 kb on - strandat 3666.443 kb on - strandat 3666.654 kb on - strand, within BWI76_RS17650at 3666.656 kb on + strand, within BWI76_RS17650at 3666.659 kb on - strand, within BWI76_RS17650at 3666.686 kb on + strand, within BWI76_RS17650at 3667.080 kb on + strand, within BWI76_RS17650at 3667.188 kb on + strand, within BWI76_RS17650at 3667.189 kb on + strand, within BWI76_RS17650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM
remove
3,664,818 + BWI76_RS17640 0.68 -0.3
3,664,831 - BWI76_RS17640 0.69 -0.0
3,665,082 - BWI76_RS17640 0.87 +0.3
3,665,122 - +0.0
3,665,385 - -0.1
3,665,852 - BWI76_RS17645 0.29 +0.4
3,666,217 - BWI76_RS17645 0.74 +1.6
3,666,433 - -0.3
3,666,443 - -0.4
3,666,654 - BWI76_RS17650 0.24 +0.1
3,666,656 + BWI76_RS17650 0.24 -0.0
3,666,659 - BWI76_RS17650 0.25 +1.6
3,666,686 + BWI76_RS17650 0.27 -0.2
3,667,080 + BWI76_RS17650 0.67 +0.2
3,667,188 + BWI76_RS17650 0.78 +0.0
3,667,189 + BWI76_RS17650 0.79 -0.4

Or see this region's nucleotide sequence