Experiment: Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08725 and BWI76_RS08730 are separated by 53 nucleotides BWI76_RS08730 and BWI76_RS08735 are separated by 143 nucleotides BWI76_RS08735 and BWI76_RS08740 overlap by 4 nucleotides
BWI76_RS08725: BWI76_RS08725 - Formiminoglutamase (EC 3.5.3.8) (from data) , at 1,837,820 to 1,838,776
_RS08725
BWI76_RS08730: BWI76_RS08730 - histidine utilization repressor, at 1,838,830 to 1,839,555
_RS08730
BWI76_RS08735: BWI76_RS08735 - Urocanate hydratase (EC 4.2.1.49) (from data) , at 1,839,699 to 1,841,387
_RS08735
BWI76_RS08740: BWI76_RS08740 - Histidine ammonia-lyase (EC 4.3.1.3) (from data) , at 1,841,384 to 1,842,907
_RS08740
Position (kb)
1839
1840
1841
1842 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1839.414 kb on - strand, within BWI76_RS08730 at 1839.414 kb on - strand, within BWI76_RS08730 at 1839.482 kb on - strand, within BWI76_RS08730 at 1839.640 kb on - strand at 1840.194 kb on - strand, within BWI76_RS08735 at 1840.386 kb on + strand, within BWI76_RS08735 at 1840.558 kb on - strand, within BWI76_RS08735 at 1840.895 kb on + strand, within BWI76_RS08735 at 1841.111 kb on + strand, within BWI76_RS08735 at 1841.181 kb on - strand, within BWI76_RS08735 at 1841.844 kb on + strand, within BWI76_RS08740 at 1841.968 kb on + strand, within BWI76_RS08740 at 1842.064 kb on - strand, within BWI76_RS08740 at 1842.136 kb on + strand at 1842.263 kb on + strand, within BWI76_RS08740 at 1842.272 kb on - strand, within BWI76_RS08740
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM remove 1,839,414 - BWI76_RS08730 0.80 -2.4 1,839,414 - BWI76_RS08730 0.80 -4.1 1,839,482 - BWI76_RS08730 0.90 -2.5 1,839,640 - +0.5 1,840,194 - BWI76_RS08735 0.29 +0.1 1,840,386 + BWI76_RS08735 0.41 +0.3 1,840,558 - BWI76_RS08735 0.51 +0.2 1,840,895 + BWI76_RS08735 0.71 -0.9 1,841,111 + BWI76_RS08735 0.84 +0.3 1,841,181 - BWI76_RS08735 0.88 -0.0 1,841,844 + BWI76_RS08740 0.30 +1.1 1,841,968 + BWI76_RS08740 0.38 +0.4 1,842,064 - BWI76_RS08740 0.45 -0.2 1,842,136 + +0.7 1,842,263 + BWI76_RS08740 0.58 +1.1 1,842,272 - BWI76_RS08740 0.58 -0.5
Or see this region's nucleotide sequence